Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P09
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   174   2e-44
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    28   1.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   2.0  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   4.7  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   6.2  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  174 bits (423), Expect = 2e-44
 Identities = 83/110 (75%), Positives = 97/110 (88%)
 Frame = +2

Query: 182 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 361
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 362 TPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXVXVXVTIA 511
           TP GEGSKTW+ ++MRIHKR+I LHSPSEIVKQITSI+IEP V V VTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 299 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEI 451
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 164  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 313
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 253
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 175 RHRETPGRGLPYSP 216
           R  ETPGR LP+SP
Sbjct: 163 RANETPGRNLPFSP 176


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 17  LTIGNS*DLKGSFKSYLKREVSPVQR*TIFD*KVVYLGRNSTSNM 151
           +TIG++  ++   KSYLK E S +    ++D   +   + STS++
Sbjct: 10  ITIGSA--VRNVAKSYLKAEASSITAKQLYDASKITSSKRSTSDL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,326
Number of Sequences: 5004
Number of extensions: 45383
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)