Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P09
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   188   3e-47
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   188   3e-47
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   188   3e-47
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   188   3e-47
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   120   7e-27

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  188 bits (457), Expect = 3e-47
 Identities = 93/115 (80%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
 Frame = +2

Query: 173 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 349
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 350 TTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXVXVXVTIAD 514
           TTRKTPCGEGSKTWDRFQMRIHKR+I LHSPSEIVKQITSI+IEP V V VTIAD
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  188 bits (457), Expect = 3e-47
 Identities = 93/115 (80%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
 Frame = +2

Query: 173 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 349
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 350 TTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXVXVXVTIAD 514
           TTRKTPCGEGSKTWDRFQMRIHKR+I LHSPSEIVKQITSI+IEP V V VTIAD
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  188 bits (457), Expect = 3e-47
 Identities = 93/115 (80%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
 Frame = +2

Query: 173 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 349
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 350 TTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXVXVXVTIAD 514
           TTRKTPCGEGSKTWDRFQMRIHKR+I LHSPSEIVKQITSI+IEP V V VTIAD
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  188 bits (457), Expect = 3e-47
 Identities = 93/115 (80%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
 Frame = +2

Query: 173 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 349
           KD  K   E    IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 350 TTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXVXVXVTIAD 514
           TTRKTPCGEGSKTWDRFQMRIHKR+I LHSPSEIVKQITSI+IEP V V VTIAD
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  120 bits (289), Expect = 7e-27
 Identities = 55/60 (91%), Positives = 57/60 (95%)
 Frame = +2

Query: 311 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIXLHSPSEIVKQITSINIEPXV 490
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+I LHSPSEIVKQITSI+IEP V
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,679,751
Number of Sequences: 237096
Number of extensions: 2249447
Number of successful extensions: 3645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3615
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)