Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P08
         (929 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    26   0.48 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.8  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   7.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 889 GGGXGGGXXGGXGGGG 842
           GGG GGG  G  G GG
Sbjct: 92  GGGRGGGRDGDRGDGG 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
 Frame = +3

Query: 360 PXPXXXTXPPXXPPXPXXXPX--PXPPPPXXPXPPXXPP 470
           P P      P  PP         P P  P  P PP  PP
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 386 PPPPPXPPXTXXS 424
           PPP P PP T  S
Sbjct: 176 PPPQPEPPVTFNS 188


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 110 YKIPVYSYDSKYFFYCLDGWI-DSN 39
           Y++ + +YD+ YF     GW+ D N
Sbjct: 462 YRVILSNYDALYFDCGFAGWVTDGN 486


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 696 PPHHLXXPPXXXXP 737
           PPHH   PP    P
Sbjct: 61  PPHHYGGPPSGGQP 74


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 105 FIFVYSIFFLNRTSKYETCNNLN 173
           F+F +    L   S +E+C  LN
Sbjct: 391 FMFSFGFILLRFLSVFESCTRLN 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,751
Number of Sequences: 336
Number of extensions: 3629
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)