Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P07
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 614  PPXXXPXPPPPPP 652
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 894  PPPPPPP 914
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 894  PPPPPPP 914
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 629  PXPPPPPP 652
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 813 AGRRXPXXPXXXXPPPPPPXXXXXSXLPPPPPPP 914
           AG + P  P    P PP P     S +PP P  P
Sbjct: 405 AGGQLP--PSAGAPMPPIPNMSNMSGMPPLPNMP 436


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 494 PPXPXPPPXXPXXXXP 541
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 629 PXPPPPPP 652
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 614 PPXXXPXPPPP 646
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 837 PXXXXPPPPPP 869
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 209 IYTEANSSFFGERQTNIIL*MMGLC 135
           +Y  A+  F G  QTN+++   G C
Sbjct: 143 MYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 209 IYTEANSSFFGERQTNIIL*MMGLC 135
           +Y  A+  F G  QTN+++   G C
Sbjct: 143 MYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 907 GGGGGXXEXXXXXGGGGGG 851
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 651 GGGGGGXGXXXG 616
           GGGGGG G   G
Sbjct: 46  GGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,308
Number of Sequences: 438
Number of extensions: 10877
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)