Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_P05
(939 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 216 8e-55
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 85 3e-15
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 82 2e-14
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 75 3e-12
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 64 6e-09
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 50 9e-05
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 50 9e-05
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 38 0.28
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 36 1.1
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 36 2.0
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 36 2.0
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 35 3.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 216 bits (527), Expect = 8e-55
Identities = 106/123 (86%), Positives = 106/123 (86%)
Frame = +1
Query: 145 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 324
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 325 RTVPLKRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXARXXVVLVG 504
RTVPLKRRKSFYPTQEKIRASSGGRPFS HVRRIRPNLKIGTVCILL GR A VVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 505 ILP 513
ILP
Sbjct: 145 ILP 147
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/40 (62%), Positives = 25/40 (62%)
Frame = +3
Query: 516 GLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
GLL T PFAF CPLRRIPQRYVI NF LPK
Sbjct: 149 GLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 188
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 84.6 bits (200), Expect = 3e-15
Identities = 48/120 (40%), Positives = 65/120 (54%)
Frame = +1
Query: 151 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 330
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 331 VPLKRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXARXXVVLVGIL 510
V LK+ K+ YPT+ ++ FS H R R NL GTV ILL GR VVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Score = 43.2 bits (97), Expect = 0.010
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 510 APGLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
A GLL T PFA CPLRR+ QRYVI + F +P+
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPE 180
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 81.8 bits (193), Expect = 2e-14
Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Frame = +1
Query: 160 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 327
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 328 TVPLKRRKSFYPTQEKIR--ASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXARXXVVLV 501
V L++ +YPT++ R S G +PFS HVR++R ++ GT+ I+L GR VV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Score = 33.5 bits (73), Expect = 7.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 510 APGLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
A GLL T P PLRR Q++VI + +N +PK
Sbjct: 169 ASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPK 210
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 74.5 bits (175), Expect = 3e-12
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +1
Query: 157 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 336
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 337 LKRRKSFYPTQE--KIRASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXARXXVVLV 501
LK+ + YPT++ + + +S +P S +R + GTV ILL G VV +
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFL 141
Score = 35.5 bits (78), Expect = 2.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 516 GLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
GLL T P+ CPLRRI Q YVI + + LP+
Sbjct: 147 GLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPE 186
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 63.7 bits (148), Expect = 6e-09
Identities = 40/114 (35%), Positives = 58/114 (50%)
Frame = +1
Query: 160 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 339
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 340 KRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXARXXVVLV 501
+R +YPT E +R R + ++R ++ GTV ILL G VV +
Sbjct: 70 QRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFL 121
Score = 37.1 bits (82), Expect = 0.64
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 516 GLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
GLL T PF PLRRIPQ YVI ++ LP+
Sbjct: 127 GLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPE 166
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 50.0 bits (114), Expect = 9e-05
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +1
Query: 277 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVC 456
+ ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSGTIV 78
Query: 457 ILLXGRXARXXVVLV 501
ILL G VV++
Sbjct: 79 ILLAGVFRGSRVVVL 93
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 50.0 bits (114), Expect = 9e-05
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +1
Query: 283 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVCIL 462
V+ K+IGG+KNGGTR V ++ FYP + + + + +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 463 LXGRXARXXVVLVGIL 510
L G VVL+ L
Sbjct: 104 LAGVNRGKRVVLLKAL 119
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 38.3 bits (85), Expect = 0.28
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 510 APGLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLP 632
A GLL T PF + PLRR+ QRYVI N +P
Sbjct: 122 ASGLLLVTGPFKYNGVPLRRVNQRYVIATKTRIKIKNIKIP 162
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 36.3 bits (80), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 516 GLLXXTAPFAFXXCPLRRIPQRYVIXPPPEFHSANFXLPK 635
GLL T PF + PLRR+ Q YVI + F +PK
Sbjct: 118 GLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPK 157
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 35.5 bits (78), Expect = 2.0
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = +1
Query: 160 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 339
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 340 KRRKSFYPTQEKIRASSGGRPFSXHVRRIRPNLKIGTVCILLXGRXAR 483
++ K + + + + S P H + + N TV I++ G+ R
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAV-CNSTPETVLIIITGQHRR 149
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 35.5 bits (78), Expect = 2.0
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 280 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSXHVRRIRPNLKIG 447
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 448 TVCILLXGRXARXXVVLV 501
T+ ILL GR V+L+
Sbjct: 62 TILILLAGRFRGKRVILL 79
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 34.7 bits (76), Expect = 3.4
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 516 GLLXXTAPFAFXXCPLRRIPQRYVI 590
GLL T PF+F PLRR+ RYVI
Sbjct: 71 GLLLVTGPFSFNGVPLRRVNSRYVI 95
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,513,785
Number of Sequences: 1657284
Number of extensions: 12607545
Number of successful extensions: 23574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23539
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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