Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P04
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.52 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 800  PPAXKKKXXPPPXSPPXXXGAPXSXXPP 883
            PP       PPP +PP   G P +  PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 422 PPPPXXKGXFFLXPPPXPPP 481
           PPPP   G     PPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = +2

Query: 800 PPAXKKKXXPPPXSPPXXXGA---PXSXXPPAV 889
           PPA      PPP  PP   GA   P    PPAV
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +2

Query: 416 KXPPPPXXKGXFFLXPPPXPPP-XXPRPRXXXGGXXXXPXXXG-XXSXPPXXGEXPQKKX 589
           K PPPP       + P P P P   P P    GG    P   G   + PP     P    
Sbjct: 730 KSPPPPPPA---VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786

Query: 590 FXHGPXKAPXP 622
                  AP P
Sbjct: 787 AGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 423 PPPPXXRGFFFXXPPPXPPXKXPXPGFXGGGXGXPP 530
           PPP    G     PPP PP     PG  G G   PP
Sbjct: 752 PPPAPIMG----GPPPPPP----PPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 423 PPPPXXRGFFFXXPPPXPPXKXPXPGFXGGGXGXPPXXGGXL 548
           PPPP   GF     PP  P   P PG+        P   G L
Sbjct: 10  PPPPPPPGF----EPPSQPPPPPPPGYVKKRKNKTPAQSGNL 47



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 462 PPPXPPXKXPXPGFXGGGXGXPPXXGG 542
           PP  PP   P PGF       PP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,198
Number of Sequences: 5004
Number of extensions: 20111
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)