Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P03
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   0.88 
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.7  
01_01_0206 - 1770622-1771347                                           29   4.7  
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    28   8.2  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 246  PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 386
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 335
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 447 LYPRGKL-PVPTLPPFNPKP 503
           L+  GKL PVP LPP +PKP
Sbjct: 68  LFAGGKLLPVPPLPPVHPKP 87


>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
            23063476-23065496
          Length = 1072

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 426  NTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQ--EXLRQYN 575
            N  +L     R  +P P LPP  P P++  M   +++H  + Q  + ++QY+
Sbjct: 936  NQSNLNLQQTRHAIPQPPLPP--PGPVHQQMHAYHQQHQQQQQHYQSIQQYH 985


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,476,854
Number of Sequences: 37544
Number of extensions: 469305
Number of successful extensions: 1292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)