Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P01
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   170   3e-43
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   2.6  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.4  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.4  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   4.5  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  170 bits (413), Expect = 3e-43
 Identities = 93/187 (49%), Positives = 126/187 (67%), Gaps = 3/187 (1%)
 Frame = +1

Query: 91  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 264
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 265 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 444
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 445 YDAILEDLVFPAEIVGKRIRXQV-GRLTAH*XALRQKPTDYY*TIKWTPSSPVYQKLTGR 621
           ++AILED+VFP EI+GKR R    GR T     L  +  +     K    S VY KLTG+
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIK-VFLDNRDANTV-DYKLGSFSSVYHKLTGK 181

Query: 622 EVTFQFP 642
            VTF+FP
Sbjct: 182 NVTFEFP 188


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -2

Query: 600 YRTGRGPLYGSIVV------CWFLSKXTLMSCEPSNLXPDALAYDLSRE 472
           Y+ G GPL  S+ +      C FL K T  SC   NL  D L Y   +E
Sbjct: 188 YQVGMGPLGRSVDLLFGGGLCSFLPKSTYRSCRSDNL--DLLKYARKKE 234


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 383 LGLGRILRSPTKTTCLPLNFFSSSRTS 303
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 574 IKWTPSSPVYQKLTGREVTFQFPETXFV 657
           +K  PS+  Y +L   E+ F+FPE  F+
Sbjct: 635 VKKVPSAKSYYELGASEMEFKFPEPGFL 662


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 253 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 345
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 411 KEATLKDIDLCVRCYPRGLGLPC 479
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,986
Number of Sequences: 5004
Number of extensions: 54021
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)