Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O21
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    31   0.23 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   8.5  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 NETPSKKARFWAVLRAFSKGSERHQSRGKVQANTPQR 299
           ++TP+KK R   V+    KG       GKV  N PQ+
Sbjct: 689 SDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQK 725


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 441 PPRPYLCPTTNPRSLELLQGQSTTXPRRVRRGVDPF 548
           PP     PT +P S   L G  T  P    R   PF
Sbjct: 357 PPNLLNLPTASPESTSWLPGSQTNIPANTNRSERPF 392


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 28/83 (33%), Positives = 36/83 (43%)
 Frame = +2

Query: 260  SEPRKGTGQHAAAFFPKLLSNYPLLQSRFTKNPIAAAERIYGXPGLPFTWPGPSRRSTGY 439
            SE R+G G +         S Y  +QS    +P ++A      PG   T P  S  S GY
Sbjct: 1513 SEGREGFGDYGLL---GAASPYKGVQSPGYTSPFSSAMS----PGYGLTSPSYSPSSPGY 1565

Query: 440  SPAXLSMPHN*PSVSRIITGPIY 508
            S +   MP + PS S   T P Y
Sbjct: 1566 STSPAYMPSS-PSYSP--TSPSY 1585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,521
Number of Sequences: 5004
Number of extensions: 63773
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)