Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O21
         (908 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112000-1|AAI12001.1|  184|Homo sapiens SUDS3 protein protein.        31   7.6  
BC098404-1|AAH98404.1|  328|Homo sapiens suppressor of defective...    31   7.6  
BC093990-1|AAH93990.1|  169|Homo sapiens SUDS3 protein protein.        31   7.6  
BC030252-1|AAH30252.1|  165|Homo sapiens SUDS3 protein protein.        31   7.6  
AK024460-1|BAB15750.1|  368|Homo sapiens FLJ00052 protein protein.     31   7.6  
AK023801-1|BAB14685.1|  169|Homo sapiens protein ( Homo sapiens ...    31   7.6  

>BC112000-1|AAI12001.1|  184|Homo sapiens SUDS3 protein protein.
          Length = 184

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 54  KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 113

Query: 373 ED 378
           ED
Sbjct: 114 ED 115


>BC098404-1|AAH98404.1|  328|Homo sapiens suppressor of defective
           silencing 3 homolog (S. cerevisiae) protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 198 KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 257

Query: 373 ED 378
           ED
Sbjct: 258 ED 259


>BC093990-1|AAH93990.1|  169|Homo sapiens SUDS3 protein protein.
          Length = 169

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 39  KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 98

Query: 373 ED 378
           ED
Sbjct: 99  ED 100


>BC030252-1|AAH30252.1|  165|Homo sapiens SUDS3 protein protein.
          Length = 165

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 35  KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 94

Query: 373 ED 378
           ED
Sbjct: 95  ED 96


>AK024460-1|BAB15750.1|  368|Homo sapiens FLJ00052 protein protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 238 KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 297

Query: 373 ED 378
           ED
Sbjct: 298 ED 299


>AK023801-1|BAB14685.1|  169|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13739 fis, clone PLACE3000197. ).
          Length = 169

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 199 RRRKPDFGQS--FVRSLKVRKDIRAEERYRPTRRSVFPETPVELPFTPKSIYEEPYRCR* 372
           +RRKP   Q    +   ++ +D+R   + +  +R   P +P  LP TP     + +  R 
Sbjct: 39  KRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARI 98

Query: 373 ED 378
           ED
Sbjct: 99  ED 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,599,375
Number of Sequences: 237096
Number of extensions: 2753627
Number of successful extensions: 6482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6480
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)