Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O20
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0373 + 23581812-23583293                                         30   2.0  
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    29   4.6  

>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 460 DVQGGPCGAPRPCARCSASTVPKPPW 383
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  PPHSVSRQYIMAAKFVVLFACIALAQGSDGATR 178
           PPH VSR ++ AA F    A  A A+G D   R
Sbjct: 41  PPHQVSRPWLPAAGFRSSAAASAAARGDDYGRR 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,923
Number of Sequences: 37544
Number of extensions: 325083
Number of successful extensions: 1243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)