Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O20
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036699-6|AAB88357.1|  170|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    29   5.4  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    29   5.4  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    29   5.4  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    29   5.4  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AF036699-6|AAB88357.1|  170|Caenorhabditis elegans Hypothetical
           protein F58F6.3 protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 451 GGPCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 341
           GG  GA    A C A++ P PP+   S  RA+P   W
Sbjct: 96  GGEGGAKNNRAVCLAASRPPPPYLIYSGRRAMPSAEW 132


>AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical
           protein M151.2 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 235 LEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK-------AKEA 393
           L++Q N   K+KD  +  K+ K  +    +   A A+ LQ  L     +       AKEA
Sbjct: 125 LQEQTNDAKKAKD--ELQKSLKSAAARATEATTAVAE-LQAKLQTVEKEHKKEIEDAKEA 181

Query: 394 LEQSRQNIERTAEELRK 444
           L   +QN ER   EL+K
Sbjct: 182 LAAEKQNSEREKMELKK 198


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 205 SMSLKKSGASRRTIAPLGQSDAGEENYELGGHD---VLSRD*VRRRCEPD-CNTEECVKN 38
           S +  KSG     +A LG+  +GE+   +   +   +  ++ + R+ E +  N + CVKN
Sbjct: 224 STASNKSGGKIGKVAKLGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQNRANAKNCVKN 283

Query: 37  LKNS 26
             NS
Sbjct: 284 RNNS 287


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 205 SMSLKKSGASRRTIAPLGQSDAGEENYELGGHD---VLSRD*VRRRCEPD-CNTEECVKN 38
           S +  KSG     +A LG+  +GE+   +   +   +  ++ + R+ E +  N + CVKN
Sbjct: 241 STASNKSGGKIGKVAKLGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQNRANAKNCVKN 300

Query: 37  LKNS 26
             NS
Sbjct: 301 RNNS 304


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 205 SMSLKKSGASRRTIAPLGQSDAGEENYELGGHD---VLSRD*VRRRCEPD-CNTEECVKN 38
           S +  KSG     +A LG+  +GE+   +   +   +  ++ + R+ E +  N + CVKN
Sbjct: 241 STASNKSGGKIGKVAKLGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQNRANAKNCVKN 300

Query: 37  LKNS 26
             NS
Sbjct: 301 RNNS 304


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 205 SMSLKKSGASRRTIAPLGQSDAGEENYELGGHD---VLSRD*VRRRCEPD-CNTEECVKN 38
           S +  KSG     +A LG+  +GE+   +   +   +  ++ + R+ E +  N + CVKN
Sbjct: 224 STASNKSGGKIGKVAKLGEKSSGEKRTRMTKAEMSRLTEKEKLERKKEQNRANAKNCVKN 283

Query: 37  LKNS 26
             NS
Sbjct: 284 RNNS 287


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 451 GGPCGAPRPCARCSASTVPKPP 386
           GG CG P PC   + + V  PP
Sbjct: 65  GGGCGGPAPCGGAAPAYVAPPP 86


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +1

Query: 220 EFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALE 399
           +F   LEQ+ N L + K  Q   KAW  G E    + NA    L+ A   A+G A +  E
Sbjct: 680 KFRGHLEQRQNELVELKREQKKLKAWDVGQEG---EANAARLLLELAPAGASG-APDVKE 735

Query: 400 QSRQNIER 423
           Q    + R
Sbjct: 736 QKEPPVVR 743


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,628
Number of Sequences: 27780
Number of extensions: 245655
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)