Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O19
         (841 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa s...   285   1e-76
AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.             285   1e-76
BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2...   143   8e-34
AK024110-1|BAB14828.1|  156|Homo sapiens protein ( Homo sapiens ...   143   8e-34

>AF019888-1|AAB71548.1|  168|Homo sapiens Arp2/3 complex 20 kDa
           subunit protein.
          Length = 168

 Score =  285 bits (700), Expect = 1e-76
 Identities = 138/168 (82%), Positives = 152/168 (90%)
 Frame = +1

Query: 127 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 306
           M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN  EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 307 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 486
           VLIE SINS+RVSI +KQADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 487 FHTEQMYKHKLVDFVIYFMEEIDKEISEMXLAVNARARICSEEFLKRF 630
           FHTEQMYKHKLVDFVI+FMEEIDKEISEM L+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168


>AF006087-1|AAB64192.1|  168|Homo sapiens p20-Arc protein.
          Length = 168

 Score =  285 bits (700), Expect = 1e-76
 Identities = 138/168 (82%), Positives = 152/168 (90%)
 Frame = +1

Query: 127 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 306
           M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN  EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 307 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 486
           VLIE SINS+RVSI +KQADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITN
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120

Query: 487 FHTEQMYKHKLVDFVIYFMEEIDKEISEMXLAVNARARICSEEFLKRF 630
           FHTEQMYKHKLVDFVI+FMEEIDKEISEM L+VNARARI +EEFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168


>BC012596-1|AAH12596.3|   78|Homo sapiens actin related protein 2/3
           complex, subunit 4, 20kDa protein.
          Length = 78

 Score =  143 bits (346), Expect = 8e-34
 Identities = 67/78 (85%), Positives = 72/78 (92%)
 Frame = +1

Query: 397 MRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYFMEEIDKEISEMX 576
           MRF MMRAENF +LRRKPV+GY ISFLITNFHTEQMYKHKLVDFVI+FMEEIDKEISEM 
Sbjct: 1   MRFTMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMK 60

Query: 577 LAVNARARICSEEFLKRF 630
           L+VNARARI +EEFLK F
Sbjct: 61  LSVNARARIVAEEFLKNF 78


>AK024110-1|BAB14828.1|  156|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14048 fis, clone HEMBA1006650, weakly similar to
           ARP2/3 COMPLEX 20 KD SUBUNIT. ).
          Length = 156

 Score =  143 bits (346), Expect = 8e-34
 Identities = 74/111 (66%), Positives = 85/111 (76%)
 Frame = +1

Query: 127 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 306
           M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN  EK
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNGKEK 60

Query: 307 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDG 459
           VLIE SINS+RVSI +KQADEIEKILC K       RA +   L    +DG
Sbjct: 61  VLIEGSINSVRVSIAVKQADEIEKILCHKLNSAGWPRAASRTCLSSLGLDG 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,758,303
Number of Sequences: 237096
Number of extensions: 1732863
Number of successful extensions: 3151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3149
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)