Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O18
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   4.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
 Frame = +2

Query: 725 PXSXXRQLPPXXXPPX*XXXTTHRQPPTPXASTLTXFP-GFPGXXPXPPXPXAXXXTPPP 901
           P S    LPP   PP          P  P A      P G P   P PP   A    P P
Sbjct: 424 PPSAPPSLPPSA-PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482

Query: 902 PXXXHTAAFA 931
                 A+ A
Sbjct: 483 APAAPVASIA 492



 Score = 23.4 bits (48), Expect(2) = 8.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 864 PRXPXXXXEPPPPPP 908
           P  P     PPPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 20.6 bits (41), Expect(2) = 8.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 891 PPPPPPXXTXRLSP 932
           PP PPP    R +P
Sbjct: 388 PPAPPPAIPGRSAP 401


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = +2

Query: 803 PTPXASTLTXFPGFP---GXXPXPPXPXAXXXTPPPP 904
           PTP  + +   P  P   G  P PP P      PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +2

Query: 794 RQPPTPXASTLTXFPGFPGXXPXPPX-PXAXXXTPPPP 904
           + PP P  + +   P  P   P PP  P      PPPP
Sbjct: 730 KSPPPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPP 766


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect(2) = 4.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 891 PPPPPPXXTXRLSP 932
           PPPPPP      SP
Sbjct: 371 PPPPPPPELLNHSP 384



 Score = 22.2 bits (45), Expect(2) = 4.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 861 RPRXPXXXXEPPPPPP 908
           R R       PPPPPP
Sbjct: 360 RSRWSNISYSPPPPPP 375


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/60 (26%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
 Frame = +3

Query: 732 PXXANCPPXRXPPPXXXKQPT-VNHXXXXXXXXXXXXGSXXXXRRPRXPXXXXEPPPPPP 908
           P   N PP   PPP    Q    N                     P+       PPPPPP
Sbjct: 184 PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,281
Number of Sequences: 5004
Number of extensions: 22047
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)