Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O16
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   0.74 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   2.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   8.6  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   8.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect(2) = 0.74
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 703 PNIITIXPLNXXPPXPPPXPP 765
           PN  T  P     P PPP PP
Sbjct: 892 PNDATSLPTIITHPTPPPPPP 912



 Score = 23.4 bits (48), Expect(2) = 0.74
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 739 PPXPPPXPPXXXXXG 783
           PP PPP PP     G
Sbjct: 945 PPPPPPPPPLVSAAG 959


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 502 PIQEPTAPARVNRKVTPGLXAPGSSAXKPRNWIPPFLXXXWXFHIXVXRXFCGLVKXVTN 681
           P    +A  ++ + VTPGL  P  S+    N+ PP       F++ +      L +  T+
Sbjct: 417 PATTSSAVPQLPKSVTPGLAYPHDSSMLSSNYRPPSALSPRNFNVSINDPEVQLSRRATS 476

Query: 682 L 684
           L
Sbjct: 477 L 477


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 104 TPSESCSKHHTLGPYKSLRKRIRNR 178
           TP   CS++HT   YK +     NR
Sbjct: 745 TPPSGCSRNHTSNSYKIIATNEMNR 769


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 206 IVAHYPQCSNDFESSFLKTCRGPMYGVSSNFRRGSLPQEHHGMSC*SP*P 57
           + +HY          FL   +G  YG+   F+  SLP+ H    C  P P
Sbjct: 347 VFSHYVMNLPGSAIEFLDAFKGCYYGLEYLFKDRSLPKVHVHCFCRFPDP 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,794
Number of Sequences: 5004
Number of extensions: 43366
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)