Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O16
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0367 + 18220099-18220905                                         25   1.7  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    27   2.0  
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    25   3.5  
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     28   9.1  
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   9.1  
04_01_0543 - 7039139-7039573                                           28   9.1  

>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 448 PEXRDLRAKNSGDALXPPPIQEPTAPARVNRKVTPGLXAPGSSAXKPRNWIPP 606
           P     + ++ G    PPP      P+ ++ KVTP    P   A K  +  PP
Sbjct: 138 PSSSSSKRRDKGKRRPPPP------PSPMSPKVTPAQQQPPQPAEKVHDASPP 184



 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 724 PLNXXPPXPPPXPP 765
           P +  PP PPP PP
Sbjct: 185 PSSLFPPLPPPPPP 198


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 27.5 bits (58), Expect(2) = 2.0
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 484 DALXPPPIQEPTAPARVNRKVTPGLXAPGSSAXKPRNWIP 603
           D L PPP   PTA A       P    P + A  P    P
Sbjct: 9   DGLDPPPATPPTAAAGTPPLAVPATNTPPNPATTPTPLTP 48



 Score = 21.4 bits (43), Expect(2) = 2.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 724 PLNXXPPXPPP 756
           PL   PP PPP
Sbjct: 80  PLGAPPPPPPP 90


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 25.0 bits (52), Expect(2) = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 703 PNIITIXPLNXXPPXPPPXP 762
           P +  + P+   PP PPP P
Sbjct: 299 PELSKLPPIPPPPPPPPPPP 318



 Score = 23.0 bits (47), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 739 PPXPPPXPP 765
           PP PPP PP
Sbjct: 339 PPAPPPPPP 347


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 496 PPPIQEPTAPARVNRKVTPGLXAPGSSA 579
           P P   P AP+R  RKV P   +P  +A
Sbjct: 13  PSPSPSPFAPSRHRRKVAPAAASPAPAA 40


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 93  LRQGPPPKVARNTIHWAPTSL 155
           L QGPPP   RN I+  PT+L
Sbjct: 319 LNQGPPPPSMRNHINLLPTAL 339


>04_01_0543 - 7039139-7039573
          Length = 144

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 466 RAKNSGDA-LXPPPIQEPTAPARVNRKVTPG 555
           R  N G + L PPP+  PTAP   +R VT G
Sbjct: 5   RDGNGGRSPLVPPPLSPPTAPLGGSRIVTTG 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,313,318
Number of Sequences: 37544
Number of extensions: 371753
Number of successful extensions: 2211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)