Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O14
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    87   4e-18
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    70   5e-13
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    48   2e-06
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    30   0.48 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   4.5  

>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 40/83 (48%), Positives = 57/83 (68%)
 Frame = +3

Query: 189 LLPSNDNIKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTGAIYK 368
           +L   + +K L TI+RDK   R +F FYA+R+IRL++EE LN LP +  +V T   A Y+
Sbjct: 12  VLNQTNQLKGLFTIIRDKTKPRSEFIFYANRIIRLIVEEGLNHLPVSSAKVTTAQNAEYE 71

Query: 369 GLKYGAGNCGVSIVRSGEAMEQG 437
           G+ +    CGVSI+R+GE+MEQG
Sbjct: 72  GVMFDGRICGVSIMRAGESMEQG 94



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 433 RGLRDCCRSIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
           +GLR+CCRS+RIGKIL + D +TH+  + Y K PEDI++R VLL  P ++T
Sbjct: 93  QGLRECCRSVRIGKILIQRDEETHKPVLHYIKLPEDISKRYVLLLDPMLAT 143


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 32/87 (36%), Positives = 55/87 (63%)
 Frame = +3

Query: 177 DSLTLLPSNDNIKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTG 356
           +++ +L     +  L TILRD+ T   +F   A+ +I ++++E+L+ LPY +C + T +G
Sbjct: 9   ENVVVLRQTMYLLSLMTILRDQQTGHSEFVRTANLIINMLMQEALSALPYKKCLIKTSSG 68

Query: 357 AIYKGLKYGAGNCGVSIVRSGEAMEQG 437
             Y G++     CGVSI+R+GE+ME G
Sbjct: 69  GTYTGVQPARDICGVSILRAGESMEYG 95



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 436 GLRDCCR-SIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
           GL   C  S+ +GK+L + D  T EA +++ K P+D   R VLL  P ++T
Sbjct: 95  GLAAACNYSVPVGKLLVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLAT 145


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 45/84 (53%)
 Frame = +3

Query: 180 SLTLLPSNDNIKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTGA 359
           +L  L     I  ++TIL +KNT   D +F+  R+  +++  + + L Y +  +    G 
Sbjct: 250 NLVQLKITPEISAIRTILINKNTHPDDLQFFLSRIGTMLMNLAGDSLAYEKKTITLHNGN 309

Query: 360 IYKGLKYGAGNCGVSIVRSGEAME 431
            ++GL+     CGVS++RSG  +E
Sbjct: 310 QWEGLQMAKELCGVSVLRSGGTLE 333



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 457 SIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
           ++ +GKIL + +  T E  + Y K P  IA   V+L    ++T
Sbjct: 342 TVCLGKILVQINKVTQEPTLHYHKLPRGIATMNVVLMASHLTT 384


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 213 KELQTILRDKNTSRX-DFKFYADRLIRLVIEESLNXLPYTECEV 341
           KEL+ + +D  T+   + KF+  +L ++ +E++L+ LP+ E E+
Sbjct: 135 KELKALSKDSETNEEQERKFWLTKL-QIAVEDTLDSLPHIEMEI 177


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 200 RWQKSQTVPELFFNIICVPLPDVLI 126
           RW    T+P +F +I+C  L  VLI
Sbjct: 286 RWSYKDTLPFIFISILCGCLGSVLI 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,279
Number of Sequences: 5004
Number of extensions: 54315
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)