Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_O14
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 93 2e-19
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 93 2e-19
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 93 3e-19
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 58 7e-09
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 31 1.6
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 31 1.6
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 31 1.6
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3
Query: 180 SLTLLPSNDNIKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTGA 359
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 287 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 346
Query: 360 IYKGLKYGAGNCGVSIVRSGEAME 431
+Y G+++ CG+S++RSGE+ME
Sbjct: 347 VYTGVEFSKRLCGISVIRSGESME 370
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 439 LRDCCRSIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
LR CC+ I+IGKIL + D + ++Y P+DIA R VLL P + T
Sbjct: 373 LRACCKGIKIGKILIHREGDNGK-QLIYHNVPKDIANRHVLLLDPILGT 420
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3
Query: 180 SLTLLPSNDNIKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTGA 359
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 262 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 321
Query: 360 IYKGLKYGAGNCGVSIVRSGEAME 431
+Y G+++ CG+S++RSGE+ME
Sbjct: 322 VYTGVEFSKRLCGISVIRSGESME 345
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 439 LRDCCRSIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
LR CC+ I+IGKIL + D + ++Y P+DIA R VLL P + T
Sbjct: 348 LRACCKGIKIGKILIHREGDNGK-QLIYHNLPKDIANRHVLLLDPILGT 395
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 93.1 bits (221), Expect = 3e-19
Identities = 40/74 (54%), Positives = 58/74 (78%)
Frame = +3
Query: 210 IKELQTILRDKNTSRXDFKFYADRLIRLVIEESLNXLPYTECEVVTPTGAIYKGLKYGAG 389
I+ + T++RD++ + DF FY+DRLIRLV+E L LP+TE +++TPTG+IY G+++
Sbjct: 297 IRGMHTLIRDRDITTPDFVFYSDRLIRLVVEHGLGHLPFTEKQIITPTGSIYMGVEFCKK 356
Query: 390 NCGVSIVRSGEAME 431
CGVSIVRSGE+ME
Sbjct: 357 LCGVSIVRSGESME 370
Score = 45.2 bits (102), Expect = 7e-05
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 439 LRDCCRSIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
LR CC+ I+IGKIL D + ++Y K P DIA R VLL P + T
Sbjct: 373 LRACCKGIKIGKILIHRVGDNGQ-QLIYHKLPMDIAERHVLLLDPVLGT 420
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 58.4 bits (135), Expect = 7e-09
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +3
Query: 294 VIEESLNXLPYTECEVVTPTGAIYKGLKYGAGNCGVSIVRSGEAME 431
V+E L LP+TE ++VTPTG+ Y G+ + CGVSI+RSGE+ME
Sbjct: 289 VVEHGLGHLPFTEKQIVTPTGSTYMGVDFCKKLCGVSIIRSGESME 334
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +1
Query: 439 LRDCCRSIRIGKILXESDTDTHEAHVVYAKFPEDIARRXVLLXYPXMST 585
LR CC+ I+IGKIL D D + ++Y KFP DIA R VLL P + T
Sbjct: 337 LRACCKGIKIGKILIHRDGDNGQ-QLIYHKFPLDIAERHVLLMDPVLGT 384
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 518 YMRSFQKTLQDDXCCSCTX*CLPGNTVXPGCKC 616
Y+R +KT + CC C CLPG+ P C C
Sbjct: 428 YLRPLRKT-KPLQCCKCPSVCLPGD---PNCSC 456
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 518 YMRSFQKTLQDDXCCSCTX*CLPGNTVXPGCKC 616
Y+R +KT + CC C CLPG+ P C C
Sbjct: 413 YLRPLRKT-KPLQCCKCPSVCLPGD---PNCSC 441
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 123 IDQDIRQWDADDVKEQFGDSLTLLPSNDNIKELQTILRDKNTSRXDFK 266
++ +IRQ + D +++ G+S L+ +D I++ IL T F+
Sbjct: 74 VENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGFQ 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,401
Number of Sequences: 37544
Number of extensions: 348349
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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