Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O13
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    29   0.073
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.29 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.39 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   6.3  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   6.3  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    22   6.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 0.073
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -3

Query: 728 GGXGGGGXGGXXGGXXGXXXGGXXGXGGGGGGXXXGGG 615
           GG G    GG   G  G         GGGGGG     G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 619 PPXXXPPPPPPXPXXP 666
           PP   PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 26.2 bits (55), Expect = 0.39
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 708 PPPPXPPXPPPXXS 749
           PP P PP PPP  S
Sbjct: 338 PPKPAPPPPPPSSS 351



 Score = 22.6 bits (46), Expect(2) = 0.65
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 699 PPXPPPPXPP 728
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 379 TPXXXPPXPPPPXPXXP 429
           TP    P PPPP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 613 PPPPXXXPPPP 645
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 616 PPPXXXPPPPP 648
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 0.65
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 702 PXPPPPXPPXPPP 740
           P PPPP P    P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 630 PXPPXXPXXXXPXXPXXPXXPXXPPXPPPPXPPXPPP 740
           P P   P    P  P     P     PPP  PP  PP
Sbjct: 21  PGPQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 0.90
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 613 PPPPXXXPPPPPPXPXXPPXXXP 681
           PP P   PPP  P P  PP   P
Sbjct: 39  PPNPSQGPPPGGP-PGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 406 PPPXPXXPPXXPXXXPPPXPPXXXPXXPXXPXXXP 510
           P P P   P  P    PP P    P  P  P   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPP--PGGPPGAP 55



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 616 PPPXXXPPPPPPXPXXPPXXXPXXPPXXPP 705
           P P     P  P    PP      PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 639 PXXPXXXXPXXPXXPXXPXXPPXPPPPXPP 728
           P  P    P  P     P  PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 403 PPPPXPXXPPXXPXXXPPPXPP 468
           PP P    PP  P   PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +2

Query: 461 PPPPXXXXPPXXPXXXPXPRGXXXXXPSPRGG 556
           PP P    PP  P   P  +       SP  G
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +1

Query: 403 PPPPXPXXPPXXPXXXPPPXPPXXXP 480
           P  P    PP      PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 634  PPPPPPXP 657
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 699  PPXPPPP 719
            PP PPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 708  PPPPXPP 728
            PPPP PP
Sbjct: 1356 PPPPPPP 1362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 764  GGKGEXXXRGGXGGXGGGGXGGXXG 690
            GG G     GG GG GG       G
Sbjct: 1705 GGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 764  GGKGEXXXRGGXGGXGGGGXGGXXG 690
            GG G     GG GG GG       G
Sbjct: 1701 GGGGSLAGLGGLGGLGGAAEASAAG 1725


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/77 (22%), Positives = 17/77 (22%)
 Frame = +1

Query: 595 PXXXPXPPPPXXXPPPPPPXPXXPPXXXPXXPPXXPPXXXXXXXXXXXLLXXSPXPPRXG 774
           P   P    P   P P PP P       P   P                       P   
Sbjct: 177 PEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 236

Query: 775 XGGXXPXXXPQNXPXXP 825
            G   P   PQ  P  P
Sbjct: 237 PGNNRPVYIPQPRPPHP 253


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/77 (22%), Positives = 17/77 (22%)
 Frame = +1

Query: 595 PXXXPXPPPPXXXPPPPPPXPXXPPXXXPXXPPXXPPXXXXXXXXXXXLLXXSPXPPRXG 774
           P   P    P   P P PP P       P   P                       P   
Sbjct: 38  PEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 97

Query: 775 XGGXXPXXXPQNXPXXP 825
            G   P   PQ  P  P
Sbjct: 98  PGNNRPVYIPQPRPPHP 114


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/77 (22%), Positives = 17/77 (22%)
 Frame = +1

Query: 595 PXXXPXPPPPXXXPPPPPPXPXXPPXXXPXXPPXXPPXXXXXXXXXXXLLXXSPXPPRXG 774
           P   P    P   P P PP P       P   P                       P   
Sbjct: 9   PEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 68

Query: 775 XGGXXPXXXPQNXPXXP 825
            G   P   PQ  P  P
Sbjct: 69  PGNNRPVYIPQPRPPHP 85



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/77 (22%), Positives = 17/77 (22%)
 Frame = +1

Query: 595 PXXXPXPPPPXXXPPPPPPXPXXPPXXXPXXPPXXPPXXXXXXXXXXXLLXXSPXPPRXG 774
           P   P    P   P P PP P       P   P                       P   
Sbjct: 65  PEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 124

Query: 775 XGGXXPXXXPQNXPXXP 825
            G   P   PQ  P  P
Sbjct: 125 PGNNRPVYIPQPRPPHP 141



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/77 (22%), Positives = 17/77 (22%)
 Frame = +1

Query: 595 PXXXPXPPPPXXXPPPPPPXPXXPPXXXPXXPPXXPPXXXXXXXXXXXLLXXSPXPPRXG 774
           P   P    P   P P PP P       P   P                       P   
Sbjct: 121 PEAEPGNNRPVYIPQPRPPHPRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 180

Query: 775 XGGXXPXXXPQNXPXXP 825
            G   P   PQ  P  P
Sbjct: 181 PGNNRPVYIPQPRPPHP 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,923
Number of Sequences: 438
Number of extensions: 9213
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)