Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O08
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   3.6  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   8.4  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 728 GXPXPXSPAXPXXPSAPXSFPAAXXPGXXRPP 823
           G P P  P  P  P+   S P    PG   PP
Sbjct: 502 GVPLPPIPGAPGMPNLNMSQPPMVPPGMALPP 533


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 364 YVI*VCXMXP-PPPPXPXKXXTVPGP 438
           Y++ V    P PPPP P K   +P P
Sbjct: 9   YILRVRYHNPLPPPPFPPKLINIPNP 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,718
Number of Sequences: 5004
Number of extensions: 45836
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)