Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_O08
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.8
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 5.1
02_05_0407 + 28715332-28715385,28715528-28715680,28715810-287158... 29 5.1
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 5.1
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902 29 6.7
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 29 6.7
07_01_0753 - 5799733-5799741,5799938-5800642 24 8.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 8.8
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 25 9.7
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +2
Query: 671 PXLXEXAHPPXGKXXXXLXGXPXPXSPAXPXXPSAPXSFPAAXXPGXXRPPXNG 832
P + PP G G P P + P P + P PG PP G
Sbjct: 418 PYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPPAPGQATPPPYG 471
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 335 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 189
GN+ FR PC +LG P S+ CT+Y SR+ + DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260
>02_05_0407 +
28715332-28715385,28715528-28715680,28715810-28715872,
28715988-28716021,28716157-28716279,28716400-28716462,
28716655-28716748,28717049-28717094,28717180-28717247,
28717360-28717408,28717593-28717658,28718876-28719074,
28719344-28719386,28719719-28719923
Length = 419
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 757 GGGGXGXGXPXKGXAXFSXGGVGGFXK 677
GGGG G G K F GG+GG K
Sbjct: 30 GGGGGGGGGGGKSQFSFGFGGLGGGSK 56
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 757 GGGGXGXGXPXKGXAXFSXGGVGG 686
GGGG G G G + GGVGG
Sbjct: 46 GGGGRGRGGGGGGGGGYGGGGVGG 69
>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
Length = 361
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 260 RYPCTFY-CLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQ 93
++P +Y C HR S+ CM + + +D ++ + G + V AV A KP+
Sbjct: 143 KHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFDVIYHGEHTC-VHKAVAAGAGKPE 198
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -1
Query: 754 GGGXGXGXPXKGXAXFSXGGVGGF 683
GGG G G P G FS GG GGF
Sbjct: 318 GGGDG-GFPGGGGGGFSGGGGGGF 340
>07_01_0753 - 5799733-5799741,5799938-5800642
Length = 237
Score = 24.2 bits (50), Expect(2) = 8.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +1
Query: 334 PVLFVLTSKYYVI*VCXMXPPPPPXP 411
P+L YY PPPPP P
Sbjct: 24 PLLPPPNQPYYAFPAAAYAPPPPPPP 49
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 391 PPPPPXPXKXXTVP 432
PPPPP P VP
Sbjct: 47 PPPPPPPPTLVFVP 60
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 391 PPPPPXPXKXXTVPGP 438
PPPPP P K T P P
Sbjct: 358 PPPPPPPPKLNTAPKP 373
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 25.4 bits (53), Expect(2) = 9.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 391 PPPPPXPXKXXTVPG 435
PPPPP P VPG
Sbjct: 254 PPPPPGPPPREIVPG 268
Score = 21.0 bits (42), Expect(2) = 9.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 385 MXPPPPPXP 411
+ PPPPP P
Sbjct: 250 LPPPPPPPP 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,994
Number of Sequences: 37544
Number of extensions: 371192
Number of successful extensions: 2980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2613
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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