Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O08
         (904 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127707-1|AAI27708.1|  344|Homo sapiens transmembrane protein 8...    30   10.0 
BC127706-1|AAI27707.1|  343|Homo sapiens transmembrane protein 8...    30   10.0 
BC101535-1|AAI01536.1|  545|Homo sapiens transcription elongatio...    30   10.0 
BC093639-1|AAH93639.1|  545|Homo sapiens transcription elongatio...    30   10.0 
BC042951-1|AAH42951.1|  545|Homo sapiens transcription elongatio...    30   10.0 
AL450998-2|CAH70850.1|  343|Homo sapiens novel protein protein.        30   10.0 
AL390203-2|CAH74038.1|  545|Homo sapiens transcription elongatio...    30   10.0 

>BC127707-1|AAI27708.1|  344|Homo sapiens transmembrane protein 82
           protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 296 ASLLGRPASSPHRYPCTFYCLHRSSRNC 213
           A+LLG  A   HR+ C  Y LH S R C
Sbjct: 160 ATLLGLGARRLHRHVCRLYELHSSQRYC 187


>BC127706-1|AAI27707.1|  343|Homo sapiens transmembrane protein 82
           protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 296 ASLLGRPASSPHRYPCTFYCLHRSSRNC 213
           A+LLG  A   HR+ C  Y LH S R C
Sbjct: 160 ATLLGLGARRLHRHVCRLYELHSSQRYC 187


>BC101535-1|AAI01536.1|  545|Homo sapiens transcription elongation
           regulator 1-like protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 671 PXLXEXAHPPXGKXXXXLXGXPXPXSPAXP--XXPSAPXSFPAA 796
           P L   A PP       L G P P  P  P    PSAP S  AA
Sbjct: 19  PVLLASAPPPAAPLLPGLPGWPAPSEPVLPLLPLPSAPDSAAAA 62


>BC093639-1|AAH93639.1|  545|Homo sapiens transcription elongation
           regulator 1-like protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 671 PXLXEXAHPPXGKXXXXLXGXPXPXSPAXP--XXPSAPXSFPAA 796
           P L   A PP       L G P P  P  P    PSAP S  AA
Sbjct: 19  PVLLASAPPPAAPLLPGLPGWPAPSEPVLPLLPLPSAPDSAAAA 62


>BC042951-1|AAH42951.1|  545|Homo sapiens transcription elongation
           regulator 1-like protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 671 PXLXEXAHPPXGKXXXXLXGXPXPXSPAXP--XXPSAPXSFPAA 796
           P L   A PP       L G P P  P  P    PSAP S  AA
Sbjct: 19  PVLLASAPPPAAPLLPGLPGWPAPSEPVLPLLPLPSAPDSAAAA 62


>AL450998-2|CAH70850.1|  343|Homo sapiens novel protein protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 296 ASLLGRPASSPHRYPCTFYCLHRSSRNC 213
           A+LLG  A   HR+ C  Y LH S R C
Sbjct: 160 ATLLGLGARRLHRHVCRLYELHSSQRYC 187


>AL390203-2|CAH74038.1|  545|Homo sapiens transcription elongation
           regulator 1-like protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 671 PXLXEXAHPPXGKXXXXLXGXPXPXSPAXP--XXPSAPXSFPAA 796
           P L   A PP       L G P P  P  P    PSAP S  AA
Sbjct: 19  PVLLASAPPPAAPLLPGLPGWPAPSEPVLPLLPLPSAPDSAAAA 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,117,030
Number of Sequences: 237096
Number of extensions: 2055405
Number of successful extensions: 9790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8647
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)