Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O08
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    27   1.5  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    27   1.5  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    24   7.4  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.1 bits (57), Expect(2) = 1.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 391 PPPPPXPXKXXTVPGPRISLY*GLXGSXH 477
           PPPPP P    + P P  +    L G  H
Sbjct: 9   PPPPPPPPPAASAPPPSSNARNALLGDIH 37



 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 385 MXPPPPPXP 411
           M PPPPP P
Sbjct: 1   MPPPPPPPP 9


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.1 bits (57), Expect(2) = 1.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 391 PPPPPXPXKXXTVPGPRISLY*GLXGSXH 477
           PPPPP P    + P P  +    L G  H
Sbjct: 9   PPPPPPPPPAASAPPPSSNARNALLGDIH 37



 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 385 MXPPPPPXP 411
           M PPPPP P
Sbjct: 1   MPPPPPPPP 9


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 689 AHPPXGKXXXXLXGXPXPXSPAXPXXPSAPXSF-PAAXXPGXXRPPXNG 832
           A PP         G P    P  P  P AP S+ P    PG   PP  G
Sbjct: 391 APPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPG 439


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +2

Query: 695 PPXGKXXXXLXGXPXPXSPAXPXXPSAPXSFPAA-XXPGXXRPP 823
           PP         G P P  PA P  P      PAA   PG   PP
Sbjct: 150 PPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPGPP 193


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 23.8 bits (49), Expect(2) = 7.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 391 PPPPPXPXKXXTVPGPRISLY 453
           PPPPP P      P P +  Y
Sbjct: 64  PPPPPPPPPMCPPPPPPMPSY 84



 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 376 VCXMXPPPPPXP 411
           +C   PPPPP P
Sbjct: 61  MCPPPPPPPPPP 72


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 757 GGGGXGXGXPXKGXAXFSXGGVGGFXKARXKPPXXS 650
           GGGG G G    G   ++ GG GGF  A    P  S
Sbjct: 120 GGGGCGGGGGG-GGGGYASGGSGGFASAPVSLPAPS 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,443
Number of Sequences: 27780
Number of extensions: 283794
Number of successful extensions: 1507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)