Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_O08
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 164 RQKFQGSR-SIPVELAVQAIFSKPQPFIYACRPYFKSNRTSPN 39
           R  FQG + ++ + +++ A   KP  + Y  +  +    TSPN
Sbjct: 65  RLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPN 107


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 75  TSIYKWLRLRENRLDS 122
           T I+ WL L  NRLD+
Sbjct: 541 TWIHPWLPLLRNRLDT 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,538
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)