Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_O06
(1359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.35
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 2.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 2.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 4.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 4.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 4.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.7
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.35
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGR--XSX 517
P P PP PP P + P P P PPP P S
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSY 90
Query: 518 XPPPXXXXFSLFPSXGTXCR 577
P P +++ P+ CR
Sbjct: 91 APAPVFNQYAMQPANDCCCR 110
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 2.5
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRXSXXP 523
P P GPP PP P G P S P PPP P G P
Sbjct: 732 PGGLPPITGGPP---PPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 524 PP 529
PP
Sbjct: 786 PP 787
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +2
Query: 332 GXXXPXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRX 511
G P P GPP PP P P PPP P G
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCP 769
Query: 512 SXXPPPXXXXF 544
PPP F
Sbjct: 770 PPPPPPPPGGF 780
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 2.5
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRXSXXP 523
P P GPP PP P G P S P PPP P G P
Sbjct: 732 PGGLPPITGGPP---PPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 524 PP 529
PP
Sbjct: 786 PP 787
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +2
Query: 332 GXXXPXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRX 511
G P P GPP PP P P PPP P G
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCP 769
Query: 512 SXXPPPXXXXF 544
PPP F
Sbjct: 770 PPPPPPPPGGF 780
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 2.5
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRXSXXP 523
P P GPP PP P G P S P PPP P G P
Sbjct: 315 PGGLPPITGGPP---PPPPPGGL---PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Query: 524 PP 529
PP
Sbjct: 369 PP 370
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +2
Query: 332 GXXXPXXXPXXXXGPPXXXPPAPAXGXRXXPXXSXXXXXXXPXXXPXXPPPXXXXPXGRX 511
G P P GPP PP P P PPP P G
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP--ISGGPPPPPPPPGGCP 352
Query: 512 SXXPPPXXXXF 544
PPP F
Sbjct: 353 PPPPPPPPGGF 363
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.1 bits (57), Expect(2) = 4.0
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXX--PPAPAXGXRXX----PXXSXXXXXXXPXXXPXXPPPXXXXPXG 505
P P GPP PP P G R P P P PP P
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 386
Query: 506 RXSXXPPP 529
PPP
Sbjct: 387 GHGMIPPP 394
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 11/38 (28%), Positives = 12/38 (31%)
Frame = +2
Query: 119 PXAPXXRPXAPGPXAXXXAXPPGGXXPRGXXGPGXXXG 232
P P P P P + PP P GP G
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG 325
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.1 bits (57), Expect(2) = 4.0
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Frame = +2
Query: 344 PXXXPXXXXGPPXXX--PPAPAXGXRXX----PXXSXXXXXXXPXXXPXXPPPXXXXPXG 505
P P GPP PP P G R P P P PP P
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 376
Query: 506 RXSXXPPP 529
PPP
Sbjct: 377 GHGMIPPP 384
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 11/38 (28%), Positives = 12/38 (31%)
Frame = +2
Query: 119 PXAPXXRPXAPGPXAXXXAXPPGGXXPRGXXGPGXXXG 232
P P P P P + PP P GP G
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG 315
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 1023 APXGGGVXGGXXRXGGGGPXXGXG 952
AP GGG GG GGGG G G
Sbjct: 77 APCGGGCGGGGGGCGGGGGGCGGG 100
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 1023 APXGGGVXGGXXRXGGGGPXXGXG 952
AP GGG GG GGGG G G
Sbjct: 77 APCGGGCGGGGGGCGGGGGGCGGG 100
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 119 PXAPXXRPXAP-GPXAXXXAXPPGGXXPRGXXG-PGXXXG 232
P P P +P GP A PPG P G G PG G
Sbjct: 166 PPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 119 PXAPXXRPXAP-GPXAXXXAXPPGGXXPRGXXG-PGXXXG 232
P P P +P GP A PPG P G G PG G
Sbjct: 166 PPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 119 PXAPXXRPXAP-GPXAXXXAXPPGGXXPRGXXG-PGXXXG 232
P P P +P GP A PPG P G G PG G
Sbjct: 166 PPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGG 205
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 119 PXAPXXRPXAP-GPXAXXXAXPPGGXXPRGXXG-PGXXXG 232
P P P +P GP A PPG P G G PG G
Sbjct: 166 PPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGG 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.145 0.507
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,024
Number of Sequences: 27780
Number of extensions: 168887
Number of successful extensions: 1330
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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