Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N23
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    31   0.29 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   1.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   6.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   8.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   8.2  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 230 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 379
           E  P   K       E E D  +  VFTDPD  D    +Y   H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 277 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 185
           LK D RL++H  C S  ISL+R     V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 238 SQLISLRRYSTARVFKLNVLSWSDGNNIRHYFASFECLCY 119
           S++  L  Y       L +L W + NN+R  F   ECLC+
Sbjct: 263 SRMDELSNYERIEQLALYLLCWGEANNVR--FMP-ECLCF 299


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 155  DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 253
            D+I    TK +E+ +P GA       LTP  VK
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 119 VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 295
           VAQ   +  + PD  + VA  +N EL++      S GNELT       P  T +   + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388

Query: 296 YTLVFTDPDN 325
           + +V T+ D+
Sbjct: 389 WLVVTTNDDS 398


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = +2

Query: 359 HHWLVGNIPGGDVSAGETL--SGYIGSGPPQGTGIHRY-VYIL----YKQPGKLDFDEKR 517
           H   V   PG    +G  +   G +G G     G+  Y V  L    YKQP +LD  +  
Sbjct: 303 HPTAVSPFPGAATGSGGEIRDEGAVGQGSLSKAGLAGYSVSDLNIPGYKQPWELDVGKPY 362

Query: 518 LTNTSIDGRASFSTKKFAEKYNLGAPVAGNFYR 616
              TS+D          A     G P    ++R
Sbjct: 363 HIATSLDIMLEAPIGSSAFNNEFGRPCINGYFR 395


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 241 RSQLISLRRYSTARVFKLNVLSWSDGNNIR 152
           RS + S+ ++  A+   L +L W + NN+R
Sbjct: 354 RSHMRSMTQFERAQQIALWLLLWGEANNVR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,621
Number of Sequences: 5004
Number of extensions: 58921
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)