Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N22
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   6.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   8.7  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.7  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   8.7  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +2

Query: 422 PTSISWPTRSPEQRICSEAKWTTLTSALRRMPLISSTVWADEQTPGHIKTPVSRRQKLTP 601
           PTSI   T SP   I        L S +R +P +SS +   + TP      +S    +TP
Sbjct: 426 PTSIHGQT-SPLSPIPPVHTTHGLVSDIRPLPSVSSPIMRADSTP------ISHNLAVTP 478

Query: 602 XTGPLP 619
              P+P
Sbjct: 479 SFSPIP 484


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  FLKILSRSATVMDKLLLLVTLVCGTQAFYMFGHEFS 141
           F ++L     +  KL L  TL+C  Q FY F ++ +
Sbjct: 661 FDEVLKYFNELSGKLALEPTLICAEQCFYQFKNKLA 696


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 43  ILSRSATVMDKLLLLVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKESYNLADDKN 222
           IL  S      L++ VT +  T     F + F+R   G       +K+L E+Y+L D+++
Sbjct: 476 ILEMSREESAPLVMHVTKLYNTVDANNF-YAFARVYSGQVKKGQKVKVLGENYSLEDEED 534

Query: 223 VIAS 234
           ++ +
Sbjct: 535 MVVA 538


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 798 LGAPKXDPKXXGIXXXPDSPXXXPAPXPXNPXXXNFPPXP 917
           +GAP   P        P  P   PA  P  P     PP P
Sbjct: 441 MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 397 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSA 504
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,606
Number of Sequences: 5004
Number of extensions: 68142
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)