Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N19
         (1099 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.083
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.13 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.39 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.90 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.90 
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   8.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 705 PPPXXPPXPPPXXGGP 752
           PP   PP PPP   GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 26.6 bits (56), Expect(2) = 0.083
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 750 PPXPXXPPPPPPPXXP 797
           PP P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 744 GGPPXPXXPPPPPPP 788
           G    P  P PPPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 654 PPPPPPPP 677
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 20.6 bits (41), Expect(2) = 0.083
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 642 SXXXPPPPPPPP 677
           S   P P PPPP
Sbjct: 335 SDTPPKPAPPPP 346


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.13
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = +3

Query: 702 PPPPXXPPXPP--PXXGGPPXPX-XPPPPPPPXXP 797
           P P   P   P  P  G PP P   PPP  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 27.9 bits (59), Expect = 0.17
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +3

Query: 642 SXXXPPPPPPPPXNXXKXXXPPPPXXPPXPPPXXGGPPXPXXPPPPPP 785
           S   P P P P  +        PP     PPP  GGP  P  PP   P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP--GGP--PGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.68
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +3

Query: 666 PPPPXNXXKXXXPPPPXXPPXPPPXXGGPPXPXXPPPPPPPXXP 797
           P P  +  +    P    PP P     GPP P  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQ---GPP-PGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 654  PPPPPPPP 677
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 768  PPPPPPP 788
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 768  PPPPPPP 788
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.90
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 752 GAPXXGGGGXRXXGGGGXRXFXXVXXGGGGGGGG 651
           G P     G    G  G         GGGGGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.90
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 654  PPPPPPPPXN 683
            P PPPPPP N
Sbjct: 1857 PEPPPPPPRN 1866


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 113 RIXSKLKPSPATIXKNFFKGEFP 45
           ++ SK   +P  +    F+GEFP
Sbjct: 41  KVCSKKNDTPKELLDGQFRGEFP 63


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 113 RIXSKLKPSPATIXKNFFKGEFP 45
           ++ SK   +P  +    F+GEFP
Sbjct: 15  KVCSKKNDTPKELLDGQFRGEFP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,052
Number of Sequences: 438
Number of extensions: 11634
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36873306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)