Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N18
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 796 PGRPDXPXHXXRXNXPSPXXNTXPLGXPFXPPPXN 900
           P     P    R + P+P     P G P  PP  N
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 737 PPXPXPPXPP 766
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 416 RCSASTVPKPPWXXRSRLRALPGDS 342
           R S S  P+PP   R R    P DS
Sbjct: 556 RASLSKTPQPPQCPRFRKLDSPSDS 580


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 169 HHRSLGQSDAGEENYELGGHDVL 101
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 809 SGRPGGXXXXXGGGXGGGGGXGXGG 735
           +GR  G     GG  G GG  G  G
Sbjct: 78  TGRGKGRGHGKGGSRGRGGNRGRTG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,218
Number of Sequences: 438
Number of extensions: 5443
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)