Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N12
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.77 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 711 PXTKXXXXPXHPPXXXPPPPPPXHPPXXXPXXPPGXPP 824
           P       P  P    PP P    PP   P  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 740 SPPXXXPPPXPPXPPPPXXSXXPPRXPPXPXXG 838
           SPP     P P  PP    S  P +    P  G
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.77
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 761 PPXPPXPPPPXXSXXP 808
           PP P  PPPP  S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 25.4 bits (53), Expect = 0.77
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 744 PPXXXPPPPPP 776
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 740 SPPXXXPPPXPPXPPPP 790
           +PP   PPP PP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 758 PPPXPPXPPPPXXS 799
           PP   P PPPP  S
Sbjct: 338 PPKPAPPPPPPSSS 351



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 764 PXPPXPPPPXXSXXPP 811
           P  P PPPP  S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 46  TPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 141
           T L CS  R    LS+S +  GR +  S R+H
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVH 659



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 810  GGXXEXXGGGGXGGXGG 760
            GG     G GG GG GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 810  GGXXEXXGGGGXGGXGG 760
            GG     G GG GG GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,825
Number of Sequences: 438
Number of extensions: 5665
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)