Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N10
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.45 
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.0  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 722 SIXXXTXPPPPSPPXXXPLPXXPPPXP 802
           S+     PPPP PP   P P  PPP P
Sbjct: 3   SLPPGNPPPPPPPPGFEP-PSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 743 PPPPSPPXXXPLPXXPPPXP 802
           PPPP P    P    PPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect(2) = 0.45
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 743 PPPPSPPXXXPLPXXPPPXP 802
           PP  +P    PLP  PPP P
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243



 Score = 21.4 bits (43), Expect(2) = 0.45
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 695 PPHLN*XFLSIXXXTXPPPPSPP 763
           PP       S+     PPPP PP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPP 195


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 432 LGRALDVLPRLFQSLLGLAVRVSERSPGDSW 340
           +G  +  L RLF SL GL    ++ SPG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 746 PPPSPPXXXPLPXXPPPXP 802
           PPPSP    P+P   PP P
Sbjct: 150 PPPSPASAPPIPSKAPPIP 168


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGGG 745
           GG G  GG  GRG   GG G G
Sbjct: 454 GGFGGRGGFGGRGGFGGGRGRG 475


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGGGG 742
           GG G  GG  G G   GG GG G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFG 227



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGGG 745
           G  G GGG  G G   GG GGG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGG 257



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGGG 745
           G  G GGG  G G   GG GGG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGG 264



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGGGG 742
           G  G GGG  G G   GG GG G
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGGPG 272


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 743  PPPPSPPXXXPLPXXPPPXP 802
            P PP PP   P P   PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 743  PPPPSPPXXXPLPXXPPPXP 802
            PPPPS P   P+P  PP  P
Sbjct: 1715 PPPPSAP---PMPAGPPSAP 1731


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 743 PPPPSPPXXXPLPXXPPPXP 802
           PPPP PP        PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 743 PPPPSPPXXXPLPXXPPPXP 802
           PPPP PP        PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 743 PPPPSPPXXXPLPXXPPPXP 802
           PPPP P      P  PPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 801 GXGGGXXGRGXXXGGEGGGG 742
           G GG   GRG   GG GG G
Sbjct: 10  GRGGSRGGRGGFNGGRGGFG 29



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 807 GXGXGGGXXGRGXXXGGEGGGG 742
           G G GG   GRG   G  GG G
Sbjct: 37  GGGRGGARGGRGGRGGARGGRG 58



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGG 748
           G  G GG   GRG   GG GG
Sbjct: 46  GRGGRGGARGGRGGSSGGRGG 66



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 810 GGXGXGGGXXGRGXXXGGEGG 748
           G  G  GG  GRG   GG GG
Sbjct: 39  GRGGARGGRGGRGGARGGRGG 59


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 409 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 287
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,344
Number of Sequences: 5004
Number of extensions: 38394
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)