Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N09
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    28   2.1  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   2.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   4.8  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   8.3  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 390 HHPSQIVLLLEDDSMSTLDNSRFGRIQCPIIHIP 289
           H+P  ++LL ED+S+S LD S  G I    + IP
Sbjct: 395 HNPKNLLLLSEDNSLSLLDIST-GNISNMSLSIP 427


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 742 GDDYIPNKICIDISINFFLSKCTDXRLLIIDDSF 641
           G D + NK C  I IN  L+KCT  + +I+DD++
Sbjct: 251 GTDILDNK-CSWI-INLALAKCTPEQRVILDDNY 282


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 387 HPSQIVLLLEDDSMSTLDNSRFGRIQCPII 298
           HP +++LL+   S  +L+ S+F R  C  +
Sbjct: 206 HPMKVLLLIPKHSPPSLERSKFSRAFCDFV 235


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 242 DLHPEQKFTLKQLNNKLVF*AEKSIQFLEYN 150
           D   +  FT KQLNN   F  EK+  FLE N
Sbjct: 171 DSQNDTLFTSKQLNNGPNFPVEKATFFLESN 201


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 575 LVYTVLYIPLIEIGTYVLY 631
           L+Y +L +P+I +GT +LY
Sbjct: 6   LLYRILTLPIILVGTTILY 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,941
Number of Sequences: 5004
Number of extensions: 72423
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)