Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N09
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 40 0.002
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 31 1.2
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 30 2.2
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 30 2.9
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 30 2.9
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 30 2.9
06_03_0778 - 24523780-24526353 30 2.9
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 29 6.6
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/59 (23%), Positives = 35/59 (59%)
Frame = +3
Query: 360 PEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSK 536
PE+ F+ +D ++ VE +++ G+PP+L++L + + E + + + +E + ++ K
Sbjct: 96 PEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKREHIRQFLKEK 154
>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 411 EVKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRY 590
EVK++ A + +GEGD E + PL+ QE+ +L++ +GFS + D T IR
Sbjct: 893 EVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLE-EGFSTWTRRDFNT--FIRA 949
Query: 591 C 593
C
Sbjct: 950 C 950
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 414 VKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSD 563
+ FI P EL ++ GD P S L + C+ + +SN + SD
Sbjct: 230 LNFIGSLPRELEVVNSGDASAIEKPQSELFKHDCSSSGKCSEYSNTESSD 279
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 321 RIESCRGCS-LNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELERLPLSH 497
++E C G ++ LP+V+ +++ PN VE + G E + L EG E+ L +
Sbjct: 757 QVEGCEGLERVSNLPQVRELFVNECPNLRHVEE--LGGL--EQLWLDEGMQEISSLWVPR 812
Query: 498 LNQEQCNEL 524
L QEQ +L
Sbjct: 813 L-QEQHRQL 820
>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 489 LSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRYCTF 599
L HL CN + Q+ G + N KS + T C+RY +F
Sbjct: 1072 LQHLEVSYCNSITQAFGHNMN-KSTVPTFPCLRYLSF 1107
>07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 297 ELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELV 449
EL+ I RI GC + LP+ KR + +Y+RV+VK SG +L+
Sbjct: 1388 ELNLIRCQRIPKRPGCDWHDLPDEKR----NVNHYERVQVKLSSGQLVDLI 1434
>06_03_0778 - 24523780-24526353
Length = 857
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -2
Query: 390 HHPSQIVLLLEDDSMSTLDN-SRFGRIQ--CPIIHIPKIKRQLHKILQLIK 247
H +++L +DD+ L+ RF R+ C I+H P ++ +H+++Q+++
Sbjct: 764 HGRVEVLLRSDDDAAEDLERVERFARVAFWC-IVHNPSLRPTIHQVVQMLE 813
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 245 CDLHPEQKFTLKQLNNKLVF*AEKSIQFLEYNKCIIY*YNRRNNFRDTQF 96
C++ QKF++ Q + KLV AEK I +L + + Y + R F
Sbjct: 50 CEVIGRQKFSILQDDFKLVSAAEKDIAWLTFKESFDYPAEHEDRIRRAAF 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,827
Number of Sequences: 37544
Number of extensions: 400392
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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