Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N08
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 85 2e-17
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 37 0.004
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 33 0.052
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 27 3.4
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 27 4.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 4.5
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 4.5
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 27 4.5
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 6.0
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 6.0
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 26 7.9
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 7.9
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 84.6 bits (200), Expect = 2e-17
Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 14/164 (8%)
Frame = +2
Query: 164 NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 343
N +R ++ T +KSGHP + +A VLF M++ + P+ + DRFILS GHA
Sbjct: 15 NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74
Query: 344 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVAAGM 511
+ Y G +++LK R++ S GHP P LN ++ G G LGQG+A A G+
Sbjct: 75 VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASAVGL 133
Query: 512 AYVGKYFDQAPYR----------VYCLVGDGEAAEGSIWESLAL 613
A +GK A Y +C +GDG EG E+ +L
Sbjct: 134 A-IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSL 176
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 36.7 bits (81), Expect = 0.004
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Frame = +2
Query: 317 FILSKGHAAP-ILYAAWAEAGLFPL--------DELKNLRKLDSDLEGHPTPRLNFVDVG 469
F++ GH AP IL A + E L P + L NL S G P+ +N G
Sbjct: 125 FVVGPGHGAPAILSALFLEDSLGPFYPRYQFTKEGLNNLINTFSLPGGFPS-HVNAEVPG 183
Query: 470 TGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEG---SIWESLALRQPLQAG 634
G L A ++Y G D+ V C+VGDGEA G + W + P ++G
Sbjct: 184 AIHEGGELGYALSVSY-GAVLDRPDLIVTCVVGDGEAETGPTATSWHAHKFLDPAESG 240
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 33.1 bits (72), Expect = 0.052
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 467 GTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWES 604
G G +G + + AG+ + KY ++ P + L GDG + +G +E+
Sbjct: 180 GNGIVGAQIPLGAGIGFAQKYLEK-PTTTFALYGDGASNQGQAFEA 224
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 540 AWSKYFPTYAMPAATASPWP-REPV 469
AWS + TY AAT SP P ++PV
Sbjct: 181 AWSLFTSTYFQKAATVSPSPNQQPV 205
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 11 ITTHYREFLRFDLSKRLRSTWFRDKINKALNTFPKMKGDK----NVDFEQLKDIANKLRI 178
+TT + E L ++ +R WF+ K KA + K + N + E++K + +R+
Sbjct: 102 LTTVWAEHLSEEVKRRFYKNWFKSK-KKAFTKYAKKYAESTQSINRELERIKKYCSVVRV 160
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 513 AMPAATASPWPREPVPTSTK 454
A P ATAS P EP P+S K
Sbjct: 401 AKPGATASTTPSEPPPSSIK 420
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +2
Query: 11 ITTHYREFLRFDLSKRLRSTWFRDKINKALNTFPKMKGDKNVDFEQLKDIANKLRID 181
+ T + + + KR+ +I+ +N PK+ K D+E+L + ++ I+
Sbjct: 480 VETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTTKRKDYEELPEEVSETSIN 536
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 11 ITTHYREFLRFDLSKRLRSTWFRDKINKALNTFPKMKGDK----NVDFEQLKDIANKLRI 178
+TT + E L ++ +R WF+ K KA + K + N + E++K + +R+
Sbjct: 102 LTTVWAEHLSEEVKRRFYKNWFKSK-KKAFTKYAKKYAESTQSINRELERIKKYCSVVRV 160
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 566 GDGEAAEGSIWESLALRQPLQAGQPRRHLR 655
GD + EG++ E +P QA P+R LR
Sbjct: 1256 GDETSPEGTVGEDEVEEEPRQAEPPKRALR 1285
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = -3
Query: 162 AISFS--CSK---STFLSPFIFGNVFNALFILSRN 73
AISF+ C K S F S F+FG + N FI+ N
Sbjct: 61 AISFTEKCEKYNISLFDSTFVFGYIVNCFFIIHLN 95
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 89 NKALNTFPKMKGDKNVDFEQ-LKDIANKLRIDSIVATNASKS 211
N++L + K K N DF+Q LK +NK + AT ASKS
Sbjct: 83 NESLPSTDKKKKKDNDDFKQNLKSSSNKTE-EKYSATQASKS 123
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 510 MPAATASPWPREPVPTSTKLS 448
+P+++ S W EP P+ST+ S
Sbjct: 204 LPSSSTSSWADEPSPSSTETS 224
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 527 YFDQAPYRVYCLVGDGEAAEGSIWESLAL 613
+FD +P + +V EA EG ++ESL L
Sbjct: 401 HFDISPKNIGKVVQPTEAIEGDVYESLKL 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,506
Number of Sequences: 5004
Number of extensions: 60933
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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