Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N08
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.8  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 193 SNNTVDSQFVGDIF*LFKVNIFVSLHFRECI---QCLIYFVTKPR 68
           S+   D  FVGD    F+ +I   + +R C    QC I  + + R
Sbjct: 26  SDGQTDEGFVGDSQGFFRRSIQQKIQYRPCTKNQQCSILRINRNR 70


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 44  DLSKRLRSTWFRDKINKALNTFPKMKGDKNVDFEQLKDIANKLRIDSIVATNAS 205
           ++ ++LR+ WF   +N+ +    ++    +V     KD+A +  ID  +   AS
Sbjct: 182 EVHEKLRN-WFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEKDIDGFLVGGAS 234


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 325 KNKSVGGSVPWRGDLVPHCVEE 260
           KN SVGG   W G L+   V E
Sbjct: 494 KNNSVGGKKEWTG-LIGELVNE 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,476
Number of Sequences: 438
Number of extensions: 4494
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)