Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N07
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.4  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.5  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   2.5  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    27   2.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.4  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   5.8  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 372 VDLEGLLVIGPGEPVLAAEVPADG 301
           VD++GL    PG+P+     PADG
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADG 742


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 373 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 483
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 251 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 123
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 271 STASSTLRAPPICRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL-- 444
           S+    +  P  C Y G KY + G ++   +E+      +  I     A  +  +E    
Sbjct: 100 SSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGK 159

Query: 445 KAKKHEDFSKNVYPDMLKKLNSIVEANK 528
              ++++  + +Y D+L KL +     K
Sbjct: 160 HYAEYDNLKQKLYEDLLPKLKTATPPQK 187


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 271 STASSTLRAPPICRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL-- 444
           S+    +  P  C Y G KY + G ++   +E+      +  I     A  +  +E    
Sbjct: 100 SSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGK 159

Query: 445 KAKKHEDFSKNVYPDMLKKLNSIVEANK 528
              ++++  + +Y D+L KL +     K
Sbjct: 160 HYAEYDNLKQKLYEDLLPKLKTATPPQK 187


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +1

Query: 448 AKKHE-DFSKNVYPDMLKKLNSIVEANKGHIAAGKLTWGDFVFTSMFDYLKTMLQIPDLE 624
           AK  E DF +   PD + KLN +  +N+ H         + +   + +       IP   
Sbjct: 400 AKSQEFDFFEAKIPDSIAKLNELTASNENHYELKTYDRAERLRQKIQEVSSNKRLIPST- 458

Query: 625 VQYPAFKKVLQSVLTQPKVKAFLDL 699
              P  KK + +VL   K  A  DL
Sbjct: 459 ---PPTKKPINAVLDAAKNSAAKDL 480


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 310 RYLGRKY-GLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVYP 486
           ++ GRK   +   + + A ++ +  E L         ++Y+  + L  + H +FS  V  
Sbjct: 146 KFFGRKVININQMHQDMAVDVPEGFELLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVN 205

Query: 487 DMLKKL 504
            M+K L
Sbjct: 206 TMVKVL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,045
Number of Sequences: 5004
Number of extensions: 48296
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)