Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N05
(1001 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.089
08_01_0059 - 394001-394708 32 0.62
07_01_0080 + 587674-588510 30 2.5
07_01_0479 + 3606663-3607448 30 3.3
03_01_0515 - 3864796-3865425 30 3.3
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 4.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 4.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.8
12_02_1174 - 26696869-26698191 29 7.7
06_02_0271 + 13618149-13618297,13618311-13618560 29 7.7
06_01_0486 - 3455030-3455770 29 7.7
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 7.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.089
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = +3
Query: 777 PSAPPXPNXGATTXXXXLXXXXXXXXXXXXXXXXXPPSRXPXXPXPXGXPRXRXSPPXGA 956
P PP P A PP++ P P P P PP G
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 957 XXXAPPPXLPXPXG 998
PPP P P G
Sbjct: 373 KKGGPPP--PPPKG 384
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 530 PRXXXPRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGPXAXP 697
P P+P A P + P P +G PP P PPP GP P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPP---KGPPPPPPAKGPPPPPPPKGPSPPP 366
>08_01_0059 - 394001-394708
Length = 235
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXP 992
PP R P P P R PP PPP P P
Sbjct: 6 PPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRP 42
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXP 992
PP P P P PR PP PPP + P
Sbjct: 26 PPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPP 62
>07_01_0080 + 587674-588510
Length = 278
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 587 RRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGP 685
RR P P S G PP P P PPP P
Sbjct: 89 RRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 551 PPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGP 685
PP P + PG P G PP P GPPP GP
Sbjct: 175 PPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMR--GPPPMGP 217
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +2
Query: 599 PGXPXGXSRGFPPGXTPXXTPXG--PPPXGP 685
PG P G G PG P G PPP GP
Sbjct: 222 PGMPGGPPPGMRPGMPPPPFRPGMPPPPPGP 252
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXP 992
PP+ P P P P SPP PPP P
Sbjct: 63 PPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASP 99
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGP 685
PRPP + P P G PP P P GPPP P
Sbjct: 597 PRPPPAPSATANTASALPPPPPRPP--GAPPPPPPPGKPGGPPPPPP 641
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGP 685
PRPP + P P G PP P P GPPP P
Sbjct: 902 PRPPPAPSATANTASALSPPPPRPP--GAPPPPPPPGKPGGPPPPPP 946
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 530 PRXXXPRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGPXAXP 697
P P P P P P G PP P P PPP P P
Sbjct: 1159 PLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVP 1214
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRX-RXSPPXGAXXXAPPPXLPXP 992
PPS P P P R PP PPP LP P
Sbjct: 182 PPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPP 219
>06_02_0271 + 13618149-13618297,13618311-13618560
Length = 132
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 991 GXGXXGGGAXXCAPXGGEXRXRGXPXGXGXXGXREGG 881
G G GGG A R RG G G G EGG
Sbjct: 31 GGGGEGGGEVEAAVERAAERGRGGGEGGGGEGGGEGG 67
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 7.7
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGPXAXP 697
PRPP P P P PP P P PPP P P
Sbjct: 84 PRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPP 134
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 681 PXGGGPXGVXXGVXPGGXP-REXPXGXPG 598
P GG P G+ G PGG P P G PG
Sbjct: 528 PRGGFPGGMPGGGFPGGMPGGGFPGGMPG 556
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -3
Query: 681 PXGGGPXGVXXGVXPGGXPREXPXG-XPG 598
P GG P G+ G PGG P P G PG
Sbjct: 546 PGGGFPGGMPGGGFPGGMPGGFPGGAMPG 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,939
Number of Sequences: 37544
Number of extensions: 206295
Number of successful extensions: 1875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2940399740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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