Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N05
(1001 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 32 0.74
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.98
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 0.98
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 30 3.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.2
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 29 6.9
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 29 6.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 9.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 9.1
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 31.9 bits (69), Expect = 0.74
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPPPXGPXAXPXXXXX*GGG 724
P PP PG P + PG +P GP P GP P G G
Sbjct: 210 PPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPGQDGSG 269
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.98
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 545 PRPPAXXPXSXXXX-RRXXPGXPXGXSRGFPPGXTPXXTPXGPPP 676
P PP P + R PG P G +PP P GPPP
Sbjct: 780 PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.98
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 545 PRPPAXXPXSXXXX-RRXXPGXPXGXSRGFPPGXTPXXTPXGPPP 676
P PP P + R PG P G +PP P GPPP
Sbjct: 780 PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPP---GXTPXXTPXGPPPXGP 685
PRP A P R P P G P G P +P GP P GP
Sbjct: 115 PRPQAYPPGQQNAFNRS-PMMPNGTPNMMSPPSMGRVPGPSPGGPQPPGP 163
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 545 PRPPAXXPXSXXXXRRXXPGXPXGXSRGFPP---GXTPXXTPXGPPPXGP 685
PRP A P R P P G P G P +P GP P GP
Sbjct: 115 PRPQAYPPGQQNAFNRS-PMMPNGTPNMMSPPSMGRVPGPSPGGPQPPGP 163
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 897 PXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXPXG 998
P P P G P PP G PPP P P G
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPP--PPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 897 PXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXPXG 998
P P P G P PP G PPP P P G
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPP--PPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 897 PXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXPXG 998
P P P G P PP G PPP P P G
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPP--PPPPG 374
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 992 GGGXXXRGGXXXCPXGGGXXATGAAXGXG 906
GGG GG P GGG AT G G
Sbjct: 214 GGGSSGGGGYASAPSGGGGYATSGGGGSG 242
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 992 GGGXXXRGGXXXCPXGGGXXATGAAXGXG 906
GGG GG P GGG AT G G
Sbjct: 214 GGGSSGGGGYASAPSGGGGYATSGGGGSG 242
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRXRXSPPXGAXXXAPPPXLPXP 992
PP P G P PP G PPP P P
Sbjct: 522 PPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLP 558
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 991 GXGXXGGGAXXCAPXGGEXRXRGXPXGXGXXGXREG 884
G G GGG P G RG G G G R G
Sbjct: 10 GFGGRGGGRGGARPAGDRPAGRGGRGGRGGRGGRGG 45
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Frame = -3
Query: 720 PPXXXXLXGXAXGPXGG----GPXGVXXGVXPGGXPREXPXGXP 601
PP G + P GG P G+ G+ PGG P P P
Sbjct: 416 PPGAPFSAGASYPPMGGPFPPNPYGMHPGMTPGGYPMSAPGKMP 459
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 882 PPSRXPXXPXPXGXPRXRXSPPXGAXXXAPPP 977
PP P P P G P+ R PP A AP P
Sbjct: 809 PPYPYPGGPVPPGPPQNRMPPPPPA-QGAPSP 839
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +2
Query: 530 PRXXXPR--PPAXXPXSXXXXRRXXPGXPXGXSRGFPPGXTPXXTPXGPP 673
PR PR PP P + +R P P PP P P PP
Sbjct: 147 PRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,940
Number of Sequences: 27780
Number of extensions: 150206
Number of successful extensions: 1133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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