Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N04
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 164 1e-41
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 140 3e-34
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 98 2e-21
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 41 2e-04
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 29 1.2
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 27 3.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.3
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.4
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 26 8.4
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 26 8.4
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 26 8.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 8.4
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 164 bits (399), Expect = 1e-41
Identities = 75/132 (56%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIVY 295
MI+FILIQNR GK RL+K+Y+ FDDDEK +L +H +++ R+ K NF+E+ N K+VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 296 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMSL 475
RRYAGLYFC CVD DN+L LE IH FVE+L+ +F NVCELDL+FNFYKV ++DE+ L
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 476 AXEIXQTSPTXV 511
EI +++ V
Sbjct: 121 GGEIGESNKKSV 132
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 140 bits (338), Expect = 3e-34
Identities = 65/130 (50%), Positives = 89/130 (68%)
Frame = +2
Query: 122 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 301
I+F L+ +R GK RLAKW+ E+ K+I +V ++V R K NFVE++ KIVYRR
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 302 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMSLAX 481
YA L+F ++ +DN L LE IH FVE L++YF NVCELDL+FNF K Y V++E+ LA
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122
Query: 482 EIXQTSPTXV 511
E+ ++S T V
Sbjct: 123 ELQESSKTNV 132
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 97.9 bits (233), Expect = 2e-21
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF----K 286
MI + I N GK RL K+Y D+ +QKLI +++A V+ R NF+E +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 287 IVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 466
I+YR+YA LYF VD ++ L L+ I FVE L+ F+NVCELDLVF F +++ ++ E
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120
Query: 467 MSLAXEIXQTS 499
+ + +T+
Sbjct: 121 VVSGGLVLETN 131
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 41.1 bits (92), Expect = 2e-04
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVH-AVVTVRDAKHTNFVEFRNFKIVY 295
MI + I N G T + K F D K+ + E A++T D +H V + +Y
Sbjct: 1 MISGLFIFNLKGDTLICK---TFRHDLKKSVTEIFRVAILTNTDYRHP-IVSIGSSTYIY 56
Query: 296 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMSL 475
++ LY N N + LE + + ++ L YF + E + N ++ ++DEM
Sbjct: 57 TKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMID 116
Query: 476 AXEIXQTSP 502
I T P
Sbjct: 117 YGIIQTTEP 125
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +2
Query: 290 VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+Y + +Y +N + + L + +V +YF + E + NF VY ++DE+
Sbjct: 58 IYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117
Query: 470 SLAXEIXQTSPTXV 511
+ QT+ T +
Sbjct: 118 -MDFGFPQTTETKI 130
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 332 DVNDNNLCYLEAIHNFVEVLNEYFHNVCELD 424
D +DN+ C+ N + LN YF N ++D
Sbjct: 180 DKSDNSNCWRPIATNLLHRLNAYFQNEVKMD 210
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 109 KRENDKIHFDPEPSRQDSTCEMVYE 183
+ + ++H +PEP QDS E++ +
Sbjct: 35 QESSSEVHANPEPDNQDSNAEILID 59
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 329 VDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFY-KVYTVVDEM 469
++ +DN+L YL L YF + + V N K TV+D +
Sbjct: 111 INASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSL 158
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 155 KTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKH 256
K RL WY + ++ L+E+ A + + KH
Sbjct: 141 KRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKH 174
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 536 SSASRVV*AL*LGMSA*SXQPKTFRLQPYTLYKN*RPSPTRKHYG-NIHLGPRQS 375
S V+ A+ GM+ PKT +PY +K+ S T ++ N HLG QS
Sbjct: 147 SKTENVIYAVDFGMAKQYRDPKTHVHRPYNEHKS--LSGTARYMSINTHLGREQS 199
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -2
Query: 340 IYIDTYTEVQTCIPPVYYLEISELDKVRVFRVS---DGDDCMNFFYQLLFFVIIKIHIPF 170
+++D ++ C V Y + ++ +RV+ V+ D CM F +V+ + P+
Sbjct: 59 LFVDPLSDGDACSRDVPYFQELSVNAIRVYAVNASLDHSACMQAFQDAGIYVLSDLAQPY 118
Query: 169 RKSS 158
S
Sbjct: 119 EAIS 122
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +2
Query: 134 LIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 301
L+ N GK + ++D + LIE+ + + + FVE+++ + R+
Sbjct: 651 LLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAFVEYKDATVANRK 706
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,176
Number of Sequences: 5004
Number of extensions: 53244
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -