Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_N04
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 258 4e-69
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 139 2e-33
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 101 5e-22
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 39 0.006
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 39 0.006
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 38 0.010
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 35 0.091
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 35 0.091
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 34 0.16
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 32 0.48
Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical pr... 29 3.4
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 29 6.0
Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 258 bits (632), Expect = 4e-69
Identities = 120/131 (91%), Positives = 123/131 (93%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 298
MIRFILIQNRAGKTRLAKWYM+FDDDEKQKLIEEVHA VTVRDAKHTNFVEFRNFKIVYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYR 60
Query: 299 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMSLA 478
RYAGLYFCICVD+ DNNL YLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM LA
Sbjct: 61 RYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 479 XEIXQTSPTXV 511
EI +TS T V
Sbjct: 121 GEIRETSQTKV 131
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 139 bits (337), Expect = 2e-33
Identities = 60/131 (45%), Positives = 90/131 (68%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 298
M++++L+ +R GK RL KWY + D +K+K+ E+ + R K F+E+++ K+VY+
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYK 60
Query: 299 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMSLA 478
RYA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE LA
Sbjct: 61 RYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLA 120
Query: 479 XEIXQTSPTXV 511
EI +TS V
Sbjct: 121 GEIQETSKKQV 131
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 101 bits (243), Expect = 5e-22
Identities = 48/133 (36%), Positives = 84/133 (63%), Gaps = 6/133 (4%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 280
MI+ IL+ N GK RL K+Y ++ ++++Q+++ E +V+ RD NF+E +
Sbjct: 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGND 60
Query: 281 FKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 460
++++YR YA LYF CVD +++ L L+ I FVE L+ F NVCELDL+F+ +V+ ++
Sbjct: 61 YRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHIL 120
Query: 461 DEMSLAXEIXQTS 499
E+ + + +T+
Sbjct: 121 GEIVMGGMVLETN 133
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 38.7 bits (86), Expect = 0.006
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +2
Query: 131 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 307
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 308 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEM 117
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 38.7 bits (86), Expect = 0.006
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +2
Query: 131 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 307
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 308 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEM 117
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 293 YRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
Y +Y +Y N N + L A++ VEV EYF + E + NF +Y + DEM
Sbjct: 59 YIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 34.7 bits (76), Expect = 0.091
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 295
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 296 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEI 115
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 34.7 bits (76), Expect = 0.091
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 295
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 296 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEI 115
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 251 KHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLV 430
+HT FVE + + VY +Y + N N L LE + FV V+ EY + E +++
Sbjct: 51 QHT-FVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEIL 109
Query: 431 FNFYKVYTVVDEM 469
+ + + DE+
Sbjct: 110 AHDFDLIFAFDEV 122
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +2
Query: 119 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 295
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 296 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
+ ++ C N N + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEI 115
>Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical
protein C23H4.2 protein.
Length = 583
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 176 YMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFR-NFKIVYRRYAGLYFCIC 328
Y NFD +QKL++ H ++ D + FR + I+Y+ + L +C
Sbjct: 512 YQNFDAKNQQKLVDSTHFIINTTD----QAIIFRTDISILYQWWFYLIIAVC 559
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 311 LYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 469
L+ + V L +E +H ++ +YF + + N V+ ++DEM
Sbjct: 64 LFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEM 116
>Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical
protein F14F8.5 protein.
Length = 367
Score = 28.3 bits (60), Expect = 7.9
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -2
Query: 409 IMEIFI*DLDKVMYGL-EITQIVIIYIDTYTEVQTCIPPVYYLEISELDKVRVFRVSDGD 233
++ I I DL ++++ + I+ I+ I ++ TCIPP+ YLE+ + + D
Sbjct: 62 LIGIAICDLFRMIFTIVTISPIIYREILSFCIPVTCIPPLSYLEMYFIQLFNSLEIILTD 121
Query: 232 DCMNFFYQLLFFVIIKIHIPFRK--SSLACS 146
+ F + F + I P K SSL S
Sbjct: 122 LSVWFVVFMTIFRALVIRYPLNKRISSLVTS 152
>Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical
protein R09D1.3 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 155 KTRLAKWYMNFD--DDEKQKLIEEVHAVVTVRDAKHTNFVEFRN 280
K R+ +Y +D D K +L + HAV D K+ ++F+N
Sbjct: 75 KRRIVGYYSEYDSTDISKNQLAKLTHAVFAFVDIKYDGTLQFKN 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,857
Number of Sequences: 27780
Number of extensions: 309893
Number of successful extensions: 894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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