Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N02
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.023
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.49 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   2.0  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.0  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    26   6.1  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 28/86 (32%), Positives = 30/86 (34%)
 Frame = -3

Query: 698 SGGGGXXVGRGXXGWPXXAXGIXXFGXIKXFCRXHXXWGGXPNXXRYFIKCGEXX*PXLK 519
           +GGG    G G  G P    G   FG        H   GG       F + G        
Sbjct: 186 NGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF-EGGPG------ 238

Query: 518 GXSGGPRXXXGGGGXLXGXXGGGGGG 441
           G  GGP    GG G   G  GG GGG
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 24/99 (24%), Positives = 26/99 (26%)
 Frame = +2

Query: 578 PPPXXNAXDKXXLXXQXPGXXSLXXATPXXPALPXXPPHHLXXXLXXSPXPGXXXAXXFX 757
           PPP         L        +     P  P+LP   P  L      S   G   A    
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 758 SXINXXPPTXXRXKGPFWXFXPXXPPLPPXPPSXPXPGP 874
                 PP             P  PP  P PP  P P P
Sbjct: 451 PSAPIAPPLPAGMPAA-----PPLPPAAPAPPPAPAPAP 484



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 446 PPXPPXXPTTXPXPXKXPGARRIXP 520
           PP PP  P   P P   P A  + P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 430 YEXXPPPPPP 459
           Y   PPPPPP
Sbjct: 187 YNPPPPPPPP 196



 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 442 PPPPPPXXP 468
           PPPPPP  P
Sbjct: 189 PPPPPPPPP 197


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 136 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGT 282
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 518 GXSGGPRXXXGGGGXLXGXXGGGGGG 441
           G  GG R   GG G   G  GG  GG
Sbjct: 38  GGRGGARGGRGGRGGARGGRGGSSGG 63


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 254 GAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTLARQIANKIISSLFILD 84
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 821  PXXPPLPPXPPSXPXP 868
            P  PP+P  PPS P P
Sbjct: 1718 PSAPPMPAGPPSAPPP 1733


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 867 GXGXEGGXGGRGGXXGXK 814
           G G  GG GGRGG  G +
Sbjct: 455 GFGGRGGFGGRGGFGGGR 472


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 166 KEDNSINTLAESAKKTIEELREKVESAL 249
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 535 INPHXRGDPAGPGXFXGXG 479
           I P  R DP GPG F G G
Sbjct: 211 IPPGARYDPTGPGDFRGFG 229


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 270 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 383
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,365
Number of Sequences: 5004
Number of extensions: 45984
Number of successful extensions: 270
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)