Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_N02
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 512 SGGPRXXXGGGGXLXGXXGGGGGG 441
           +GG      GG  + G   GGGGG
Sbjct: 27  AGGVVTGASGGSIVVGANNGGGGG 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 90  FGYLRTSSRIGYXNHHSN 37
           F YL  S RI Y N +SN
Sbjct: 444 FAYLSRSERINYYNVNSN 461


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/41 (26%), Positives = 13/41 (31%)
 Frame = +3

Query: 465  PXQPTPXPXXXXXXXXXXXXXXXXGLPTLDKIPXXVWXPPP 587
            P +P   P                G+P L   P   W PPP
Sbjct: 1128 PQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 421 LFNNVEXIITXDI--FGVMYLDTKKLLLRLSVLPRASDFYKIR 299
           LF+NV      +I  +    LDTKK   ++S L   +D Y ++
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWNNKISALRALNDLYNVK 401


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 156 SFDECMHIGEADSQQDNQQLVHFGY 82
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,494
Number of Sequences: 438
Number of extensions: 4583
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)