Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M24
         (1127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.096
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.90 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.096
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 524 PPPPXXPPPXXXLXPXAXXGGGAGKXXTXPXPPPPR 631
           PPPP  PPP          G G+      P PPPPR
Sbjct: 311 PPPP--PPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 518 PPPPPPXXPPPXXXLXPXAXXGGGAGKXXTXPXPPPP 628
           PP PPP  P       P     G A +  T P P PP
Sbjct: 388 PPAPPPAIPGRSAPALPPL---GNASRTSTPPVPTPP 421


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
 Frame = +2

Query: 497 PXXFFXXPPPPPPXXPPPXXXL---XPXAXXGGGAGKXXTXPXPPPP 628
           P      P P P   PPP   +    P     G AG     P PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +2

Query: 518 PPPPPP--XXPPPXXXLXPXAXXGGGAGKXXTXPXPPPPRRXXXXPXP 655
           PPPPPP    P P     P        G     P PPPP      P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG--GPPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +1

Query: 499 KXXFXXPPPPPPXXPXPLXXSSPPRAXXXXXRXXXHXTXPPPP 627
           K     PPPPPP    P    +P                PPPP
Sbjct: 726 KLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
 Frame = +2

Query: 518 PPPPPPXXPPPXXXLXPXAXXGGGAGKXXT-XPXPPPPRRXXXXPXP 655
           PPPPPP  PP                   +    PPPP      P P
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRP 285



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +1

Query: 517 PPPPPPXXPXPLXXSSPPRAXXXXXRXXXHXTXPPPPXPXSR 642
           PPPPP   P     S  P               PPPP   S+
Sbjct: 240 PPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQ 281



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 978  PPPPPTPXXPIXPPT 1022
            PPPP TP  P  PPT
Sbjct: 273  PPPPATPSQPPRPPT 287



 Score = 24.2 bits (50), Expect(2) = 2.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 518 PPPPPPXXPPP 550
           PPPPPP  PPP
Sbjct: 189 PPPPPP--PPP 197



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 497 PXXFFXXPPPPPP 535
           P  +   PPPPPP
Sbjct: 184 PSDYNPPPPPPPP 196


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 517  PPPPPPXXPXPLXXSSPPRAXXXXXRXXXHXTXPPPPXPXS 639
            P PPPP    P   S+PP             + PPPP P S
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP-------PSAPPPPLPAS 1738



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 978  PPPPPTPXXPIXPPTXP 1028
            PPPP  P  P  PP+ P
Sbjct: 1715 PPPPSAPPMPAGPPSAP 1731


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 524 PPPPXXPPP 550
           PPPP  PPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 9.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 518 PPPPPP 535
           PPPPPP
Sbjct: 907 PPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,403
Number of Sequences: 5004
Number of extensions: 21170
Number of successful extensions: 289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 599646782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)