Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M23
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    33   0.077
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.8  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626  ESAPPPPGKRXVXRFLGPPSXXPXPHLXXXGPP-GPFRXAGXXGXXXP 766
            ++APPPP    + +  GPPS  P   L   GPP G    +G  G   P
Sbjct: 1879 QAAPPPPPPMALPK-AGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 27/84 (32%), Positives = 28/84 (33%)
 Frame = +2

Query: 620 LXESAPPPPGKRXVXRFLGPPSXXPXPHLXXXGPPGPFRXAGXXGXXXPXXGGXIPXFPP 799
           L +S PPPP    V      P   P P     GPP P    G  G   P      P  PP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP------PPPPP 781

Query: 800 KXRGITPGXXPX*PQXAPXKAPEP 871
                  G     P  AP   PEP
Sbjct: 782 PPAVSAGGSRYYAP--APQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 22/83 (26%), Positives = 23/83 (27%)
 Frame = +2

Query: 638 PPPGKRXVXRFLGPPSXXPXPHLXXXGPPGPFRXAGXXGXXXPXXGGXIPXFPPKXRGIT 817
           PPP  R     L      P P      PP   R  G            +P  PP  R   
Sbjct: 293 PPPSSRVSAAALAANKKRPPPP-----PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347

Query: 818 PGXXPX*PQXAPXKAPEPLXKXP 886
            G  P  PQ      P P    P
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAP 370


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 26/77 (33%), Positives = 27/77 (35%)
 Frame = -1

Query: 864 GAFXGAXWGQXGFXPGVIPRXFGGKXGIXPPXXGXXXPXXPAXRKGPGGPXXXKXGXGNX 685
           G F G   G  G  PG  P  FGG  G      G           GPGG    + G G  
Sbjct: 188 GGFGGFGGGSGGPPPG--PGGFGGFGGFG--GEGHHHGGHGGFGGGPGG---FEGGPGGF 240

Query: 684 XGGPKKRQTXLFPGGGG 634
            GGP      L   GGG
Sbjct: 241 GGGPGGFGGGLGGFGGG 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,053
Number of Sequences: 5004
Number of extensions: 29056
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)