Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M19
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.78 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   4.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 365 PPPPPPXPXFXXGGGGK 315
           PPPPPP P      GGK
Sbjct: 945 PPPPPPPPPLVSAAGGK 961


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect(2) = 1.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 398 PRGGXKKXFXXPPPPPPXP 342
           P  G       PPPPPP P
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313



 Score = 21.8 bits (44), Expect(2) = 1.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 365 PPPPPPXPXF 336
           PPPPPP   F
Sbjct: 309 PPPPPPSNDF 318


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 365 PPPPPPXPXFXXGGGGK 315
           PPPPPP P     GG +
Sbjct: 775 PPPPPPPPPAVSAGGSR 791



 Score = 23.4 bits (48), Expect(2) = 5.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 362 PPPPPXPXFXXGGGGKK 312
           PPPPP P      GG +
Sbjct: 775 PPPPPPPPPAVSAGGSR 791



 Score = 23.4 bits (48), Expect(2) = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 648 PPPPPPXP 671
           PPPPPP P
Sbjct: 776 PPPPPPPP 783



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 645 APPPPPP 665
           +PPPPPP
Sbjct: 731 SPPPPPP 737



 Score = 21.0 bits (42), Expect(2) = 5.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 365 PPPPPP 348
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.4 bits (48), Expect(2) = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 365 PPPPPPXP 342
           PPPPPP P
Sbjct: 370 PPPPPPPP 377



 Score = 21.4 bits (43), Expect(2) = 4.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 374 FXXPPPPPP 348
           +  PPPPPP
Sbjct: 368 YSPPPPPPP 376


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 460 PPPPPPPXF 434
           PPPPPPP F
Sbjct: 10  PPPPPPPGF 18



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 365 PPPPPPXPXF 336
           PPPPPP P F
Sbjct: 9   PPPPPPPPGF 18



 Score = 23.4 bits (48), Expect(2) = 6.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 648 PPPPPPXP 671
           PPPPPP P
Sbjct: 9   PPPPPPPP 16



 Score = 20.6 bits (41), Expect(2) = 6.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +3

Query: 759 PXXXXXPPXKXPPPXXP 809
           P     PP + PPP  P
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 307 GXFFPPPPXXKXGXGGGGGG 366
           G   PPPP  + G G G GG
Sbjct: 72  GNAAPPPPGAEGGPGAGFGG 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,670
Number of Sequences: 5004
Number of extensions: 16600
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)