Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M18
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   6.3  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   8.3  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 243 CPQLVNDCSGHXAHPRTGQL 302
           C +  NDCSGH    + GQL
Sbjct: 296 CSKATNDCSGHGRCSKYGQL 315


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 223 ACGVLTSAHNSSTIAPVTQPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 384
           A  ++T A ++    P T+ T ++V++  +  ++G PF  +  L++P    E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 492 RLRXLHVRPQEPNGTYHSLDGHGKRARQ 575
           + R L +R    +GT HSLD HG   R+
Sbjct: 291 KYRSLAMRSLAHSGTSHSLDLHGATVRE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,087
Number of Sequences: 5004
Number of extensions: 45796
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)