Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M18
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835...    31   1.6  
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394...    30   2.9  
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335...    29   3.8  
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827...    29   3.8  
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     28   8.7  

>07_03_1770 -
           29382508-29382591,29382901-29383041,29383134-29383520,
           29383685-29383930,29385396-29385437,29385973-29386461
          Length = 462

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 378 DRMEEEQRASRRGGRPQXAVRAPEQXAHLPDQXPQ*RGRLRXL 506
           DR  E   A  R GR Q   + PE  A LP+  P  + RLR L
Sbjct: 29  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71


>03_04_0140 +
           17638335-17638583,17638843-17639061,17639206-17639443,
           17640614-17640809,17640888-17640942,17641495-17641645,
           17642501-17642809,17642950-17643215,17643311-17644237,
           17644386-17644712
          Length = 978

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +3

Query: 507 HVRPQEPNGTYHSLDGHGK----RARQMTKDPQRGSXD---RTLTITCXVDPAXPVL*GD 665
           +V  Q+P G Y +LD +GK     ARQ   DP  G  D   R + I        PVL G+
Sbjct: 231 NVIDQDPEGKYEALDKYGKDLTAMARQGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGE 290

Query: 666 XG 671
            G
Sbjct: 291 PG 292


>03_02_0691 +
           10432615-10433109,10433155-10433216,10433526-10433565,
           10434562-10434807,10435020-10435189,10435323-10435539,
           10435615-10435755,10435943-10436026
          Length = 484

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +3

Query: 378 DRMEEEQRASRRGGRPQXAVRAPEQXAHLPDQXPQ*RGRLRXL 506
           DR  E   A  R GR Q   + PE  A LP   P  + RLR L
Sbjct: 31  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73


>02_04_0561 +
           23879976-23879981,23880531-23882558,23882687-23882722,
           23882826-23882939,23883158-23883226,23883311-23883445
          Length = 795

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 516 PQEPNGTYHSLDGHGKRARQMTKDPQRGS 602
           PQ+PNGT      +GKR R   + P   S
Sbjct: 753 PQQPNGTMPDTSANGKRKRPRAQKPTEAS 781


>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 716 PXCWAPPXAPG 748
           P CWAPP APG
Sbjct: 241 PVCWAPPSAPG 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,383
Number of Sequences: 37544
Number of extensions: 322487
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)