Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M18
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.10 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.10 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.31 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 319 IVGRPFNLNCTLA-VPLDSFEIVWKKNSVPLGEVAGLXERYELQNXGLTFQIXGRSNEDD 495
           + G    L C +A  P++  EI W++ +  L +      R ++   G T  I     + D
Sbjct: 531 VAGETLRLKCPVAGYPIE--EIKWERANRELPDDL----RQKVLPDG-TLVITSVQKKGD 583

Query: 496 YGXYTCGLKNQTGH 537
            G YTC  +N+ GH
Sbjct: 584 AGVYTCSARNKQGH 597


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 319 IVGRPFNLNCTLA-VPLDSFEIVWKKNSVPLGEVAGLXERYELQNXGLTFQIXGRSNEDD 495
           + G    L C +A  P++  EI W++ +  L +      R ++   G T  I     + D
Sbjct: 531 VAGETLRLKCPVAGYPIE--EIKWERANRELPDDL----RQKVLPDG-TLVITSVQKKGD 583

Query: 496 YGXYTCGLKNQTGH 537
            G YTC  +N+ GH
Sbjct: 584 AGVYTCSARNKQGH 597


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 28/100 (28%), Positives = 39/100 (39%)
 Frame = +1

Query: 352  LAVPLDSFEIVWKKNSVPLGEVAGLXERYELQNXGLTFQIXGRSNEDDYGXYTCGLKNQT 531
            LAV + + E+ WK      G V    +R      G  F      +  D G Y+C ++N  
Sbjct: 1299 LAVGVPAPEVTWKVR----GAVLQSSDRLRQLPEGSLF--IKEVDRTDAGEYSCYVENTF 1352

Query: 532  GHITAWMVTGNVHAR*PRTPNVGRXTEH*QSLAXLIXPPP 651
            GH T       VHA  P +P +        SL   + P P
Sbjct: 1353 GHDTVTHQL-IVHAP-PHSPQITLTATTTNSLTMKVRPHP 1390


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 316 YIVGRPFNLNCTL 354
           YI G PFN NC++
Sbjct: 676 YIGGNPFNCNCSM 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,565
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)