Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M13
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   0.89 
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    29   3.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = +3

Query: 618 PPPKLFXPTTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
           PPPK   P     G     P  G P PP     +     PP  K    GGPP
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK---KGGPP 378


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +1

Query: 64  SPVRISSALSLSTA--HHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP-*DF 234
           SP R++  L   T   HH   VR    +HR+ P+   AT  S + +G    H  +P    
Sbjct: 473 SPSRVNPVLLCETGQRHHYSSVRHGDPVHRNSPQISVATSPSPIRRGD-PAHINIPQISV 531

Query: 235 RTTXLTRSP-SQRTHRTSARLGRTAPSPCLXQ 327
            T    RSP +Q   R   R+    PS    Q
Sbjct: 532 ATPPECRSPRAQAPPRFGTRMPVNLPSSLYQQ 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,256
Number of Sequences: 37544
Number of extensions: 308710
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)