Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_M13
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.46
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.46
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.46
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 5.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 5.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 5.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 5.6
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 28 7.4
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 28 7.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.46
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +3
Query: 618 PPP---KLFXPTTNXGGXXSNXPXXG-XPQPPXLXNXTXXXXXPPK--XKXPRXGGPP 773
PPP L P+T+ GG + P G P PP L T PP P GGPP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.46
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +3
Query: 618 PPP---KLFXPTTNXGGXXSNXPXXG-XPQPPXLXNXTXXXXXPPK--XKXPRXGGPP 773
PPP L P+T+ GG + P G P PP L T PP P GGPP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 743
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.46
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +3
Query: 618 PPP---KLFXPTTNXGGXXSNXPXXG-XPQPPXLXNXTXXXXXPPK--XKXPRXGGPP 773
PPP L P+T+ GG + P G P PP L T PP P GGPP
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPP 326
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Frame = +3
Query: 609 GGXPPPKLFX-----PTTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXP 755
G PPP +F P GG P G P PP + PP+ K P
Sbjct: 82 GIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTP 135
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +3
Query: 609 GGXPPPKLFXPTTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
G PPP+ P G P G P PP + PP+ P PP
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +3
Query: 609 GGXPPPKLFXPTTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
G PPP+ P G P G P PP + PP+ P PP
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +3
Query: 609 GGXPPPKLFXPTTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
G PPP+ P G P G P PP + PP+ P PP
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--GSPPPPPPPRGSPPTGSLPP 320
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 530 PPXPXFXXKNXFAGXPPXXKKKTPXXGGXPPP 625
PP P +G PP P GG PPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 202 RTPHQGVP*DFRT-TXLTRSPSQRTHRTSARLGRTAPSPCLXQPXRPXPKXFSQGXPXRK 378
+TP + + ++ T +SPS T +T +P +P P PK G P +K
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKK 1872
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 202 RTPHQGVP*DFRT-TXLTRSPSQRTHRTSARLGRTAPSPCLXQPXRPXPKXFSQGXPXRK 378
+TP + + ++ T +SPS T +T +P +P P PK G P +K
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKK 1872
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 202 RTPHQGVP*DFRT-TXLTRSPSQRTHRTSARLGRTAPSPCLXQPXRPXPKXFSQGXPXRK 378
+TP + + ++ T +SPS T +T +P +P P PK G P +K
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKK 1872
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 202 RTPHQGVP*DFRT-TXLTRSPSQRTHRTSARLGRTAPSPCLXQPXRPXPKXFSQGXPXRK 378
+TP + + ++ T +SPS T +T +P +P P PK G P +K
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPKSPTPKKSPPGSPKKK 1872
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 642 TTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
T++ G S P P PP PP P G PP
Sbjct: 451 TSSQSGQRSGSPPGAVPPPPPPQQQHQQQQHPPHHAPPHVGAPP 494
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 642 TTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
T++ G S P P PP PP P G PP
Sbjct: 776 TSSQSGQRSGSPPGAVPPPPPPQQQHQQQQHPPHHAPPHVGAPP 819
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 642 TTNXGGXXSNXPXXGXPQPPXLXNXTXXXXXPPKXKXPRXGGPP 773
T++ G S P P PP PP P G PP
Sbjct: 776 TSSQSGQRSGSPPGAVPPPPPPQQQHQQQQHPPHHAPPHVGAPP 819
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,688
Number of Sequences: 27780
Number of extensions: 235788
Number of successful extensions: 692
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -